| Oligo-State | Ligands | GMQE | QMEAN | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Homo-trimer (matching prediction) | 0.72 | -1.26 | |||||||||||
1 x 2-acetamido-2-deoxy-beta-D-glucopyranose
1 x 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
2 x alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
| |||||||||||||
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 6xr8.1.A | 100.00% | Spike glycoprotein Distinct conformational states of SARS-CoV-2 spike protein |
| Biounit Oligo State | Homo-trimer |
| QSQE | 0.87 |
| Method | EM |
| Seq Similarity | 0.62 |
| Coverage | 1.00 |
| Range | 14-1162 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | alpha-D-mannopyranose-(1-4)-2… | |
| ✓ | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not in contact with model. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not biologically relevant. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not biologically relevant. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not biologically relevant. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not biologically relevant. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not in contact with model. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not biologically relevant. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not in contact with model. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not biologically relevant. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not in contact with model. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Clashing with protein. | alpha-D-mannopyranose-(1-4)-2… | |
| ✕ - Not in contact with model. | alpha-D-mannopyranose-(1-3)-a… | |
| ✕ - Not in contact with model. | alpha-D-mannopyranose-(1-3)-a… | |
| ✕ - Not in contact with model. | alpha-D-mannopyranose-(1-3)-a… |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN |
|---|---|---|---|
| Homo-trimer (requested by user) | None | 0.69 | -0.73 |
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 6zge.1.A | 99.67% | Spike glycoprotein Uncleavable Spike Protein of SARS-CoV-2 in Closed Conformation |
| Biounit Oligo State | Homo-trimer |
| QSQE | 0.82 |
| Method | EM |
| Seq Similarity | 0.62 |
| Coverage | 0.94 |
| Range | 14-1146 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Homo-trimer (matching prediction) | 0.65 | -2.33 | |||||||||||||||||||||||
8 x 2-acetamido-2-deoxy-beta-D-glucopyranose
3 x 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
| |||||||||||||||||||||||||
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 6zwv.1.A | 99.92% | Spike glycoprotein Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: 3 Closed RBDs |
| Biounit Oligo State | Homo-trimer |
| QSQE | 0.82 |
| Method | EM |
| Seq Similarity | 0.62 |
| Coverage | 1.00 |
| Range | 27-1151 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✓ | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Clashing with protein. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN |
|---|---|---|---|
| Homo-trimer (matching prediction) | None | 0.60 | -4.00 |
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 6acc.1.A | 76.79% | Spike glycoprotein Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-free conformation with three RBD in down conformation |
| Biounit Oligo State | Homo-trimer |
| QSQE | 0.81 |
| Method | EM |
| Seq Similarity | 0.55 |
| Coverage | 0.93 |
| Range | 14-1137 |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN |
|---|---|---|---|
| Homo-trimer (matching prediction) | None | 0.60 | -3.71 |
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 6acd.1.A | 76.79% | Spike glycoprotein Trypsin-cleaved and low pH-treated SARS-CoV spike glycoprotein and ACE2 complex, ACE2-free conformation with one RBD in up conformation |
| Biounit Oligo State | Homo-trimer |
| QSQE | 0.82 |
| Method | EM |
| Seq Similarity | 0.55 |
| Coverage | 0.93 |
| Range | 14-1137 |
Model-Template Alignment
| Oligo-State | Ligands | GMQE | QMEAN |
|---|---|---|---|
| Monomer | None | 0.08 | -1.86 |
| Global Quality Estimate | Local Quality Estimate | Comparison |
|---|---|---|
| Template | Seq Identity | Coverage | Description | |
|---|---|---|---|---|
| 6vw1.1.B | 85.71% | SARS-CoV-2 chimeric RBD Structure of SARS-CoV-2 chimeric receptor-binding domain complexed with its receptor human ACE2 |
| Biounit Oligo State | Hetero-dimer |
| QSQE | 0.00 |
| Method | X-ray, 2.68 Å |
| Seq Similarity | 0.58 |
| Coverage | 0.17 |
| Range | 334-527 |
| Ligand | Added to Model | Description |
|---|---|---|
| ✕ - Binding site not conserved. | CHLORIDE ION | |
| ✕ - Binding site not conserved. | 1,2-ETHANEDIOL | |
| ✕ - Not biologically relevant. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Binding site not conserved. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Not in contact with model. | 2-acetamido-2-deoxy-beta-D-gl… | |
| ✕ - Binding site not conserved. | beta-D-mannopyranose-(1-4)-2-… | |
| ✕ - Not biologically relevant. | beta-D-mannopyranose-(1-4)-2-… | |
| ✕ - Not biologically relevant. | beta-D-mannopyranose-(1-4)-2-… | |
| ✕ - Not biologically relevant. | ZINC ION |
Model-Template Alignment
Click model image to view in 3D
Click model image to view in 3D
Delete Model - ""
Are you sure you want to delete this model?
(This really can't be undone!)
Delete Project - ""
Are you sure you want to delete this project?
(This really can't be undone!)