Filter results by: Taxon Proteome
1 - 50 of 136324 UniProtKB matches
(83804 models, 6247 structures.)
UniProtKB AC
(Name)
UniProtKB Section
 
Homology Model
 
Experimental Structure
OrganismDescription
Q9LRZ2
(FB147_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Putative F-box protein At3g16820;
Q9LXQ0
(FB339_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Probable F-box protein At3g44130;
Q9LW31
(FUS3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
B3 domain-containing transcription factor FUS3;
Protein FUSCA3;
Q9M8S7
(ARS1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein ABA AND ROS SENSITIVE 1;
Q8LF80
(CKB21_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Cyclin-dependent kinase B2-1;
Q8GYC7
(PGL1B_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
PGR5-like protein 1B, chloroplastic;
Ferredoxin-plastoquinone reductase 2;
F4I274
(PHL8_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Myb family transcription factor PHL8;
Protein PHR1-LIKE 8;
Q9SD71
(SGIP1_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
E3 ubiquitin-protein ligase SGIP1;
SGS3-INTERACTING PROTEIN 1;
Q07100
(PP2A3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Serine/threonine-protein phosphatase PP2A-3 catalytic subunit;
Protein phosphatase 2A isoform 3;
P48578
(PP2A4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Serine/threonine-protein phosphatase PP2A-4 catalytic subunit;
Protein phosphatase 2A isoform 4;
Q9SB52
(PUMP4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mitochondrial uncoupling protein 4;
Mitochondrial dicarboxylate carrier 2;
Q9SJY5
(PUMP5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mitochondrial uncoupling protein 5;
Mitochondrial dicarboxylate carrier 1;
Q9LNL1
(WAXS8_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Probable long-chain-alcohol O-fatty-acyltransferase 8;
Wax synthase 8;
Q8H0Y8
(WRK41_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable WRKY transcription factor 41;
WRKY DNA-binding protein 41;
F4J469
(TI22L_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein TIC 22-like, chloroplastic;
Translocon at the inner envelope membrane of chloroplasts 22-III;
Q7XA73
(TIF4A_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein TIFY 4A;
Protein PEAPOD 1;
Q8RV83
(Y2172_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
B3 domain-containing protein At2g31720;
Protein AUXIN RESPONSE FACTOR 70;
Q9LXQ7
(FB209_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Putative F-box protein At3g58950;
Q9LH83
(AATP6_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
AAA-ATPase At3g28520;
Q9M903
(TGD4_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic;
Protein PIGMENT DEFECTIVE 320;
Q9LIB3
(BAG8_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
BAG family molecular chaperone regulator 8, chloroplastic;
Bcl-2-associated athanogene 8;
O64864
(LTG13_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Non-specific lipid transfer protein GPI-anchored 13;
Protein YELLOW-LEAF-SPECIFIC GENE 3;
Xylogen-like protein 9;
F4HWQ8
(CVIF1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Cell wall / vacuolar inhibitor of fructosidase 1;
P92556
(M1260_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Uncharacterized mitochondrial protein AtMg01260;
ORF205;
Q84WE4
(PMEI3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Pectinesterase inhibitor 3;
Pectin methylesterase inhibitor 3;
Q9FI17
(ARAE4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative UDP-arabinose 4-epimerase 4;
UDP-D-xylose 4-epimerase 4;
Q9STI6
(GAE5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
UDP-glucuronate 4-epimerase 5;
UDP-glucuronic acid epimerase 5;
Q9FVV9
(NAP5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable non-intrinsic ABC protein 5;
MRP-related protein 2;
Q9LJL4
(IPT8_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Adenylate isopentenyltransferase 8, chloroplastic;
Adenylate dimethylallyltransferase 8;
Cytokinin synthase 8;
Plant growth activator 22;
F4HPY8
(ALKR6_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable aldo-keto reductase 6;
Q8GXL7
(GAT24_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
GATA transcription factor 24;
Protein TIFY 2B;
ZIM-like 1 protein;
Q94ID2
(IPT5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Adenylate isopentenyltransferase 5, chloroplastic;
Adenylate dimethylallyltransferase 5;
Cytokinin synthase 5;
F4JGP6
(LPXD1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial;
Protein LIPID X D1;
Q9SKT4
(FTCDL_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Formiminotransferase cyclodeaminase-like protein;
P82715
(PPD5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
PsbP domain-containing protein 5, chloroplastic;
OEC23-like protein 6;
PsbP-related thylakoid lumenal protein 4;
Thylakoid lumenal 35.8 kDa protein;
Q6NQK9
(CCB4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic;
Q9LQ32
(GXM3_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Glucuronoxylan 4-O-methyltransferase 3;
Q9LV52
(HSFC1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Heat stress transcription factor C-1;
AtHsf-08;
Q9FLL0
(AGL75_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Agamous-like MADS-box protein AGL75;
Q9M5J8
(PGIP2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Polygalacturonase inhibitor 2;
Polygalacturonase-inhibiting protein 2;
O80928
(DOF24_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Dof zinc finger protein DOF2.4;
Protein PHLOEM EARLY DOF 1;
Q84JL7
(VTE7_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Alpha/beta hydrolase domain-containing protein VTE7;
Protein VITAMIN E DEFICIENT 7;
Q501G6
(CSPLY_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
CASP-like protein 4A2;
Q9ZW81
(BH129_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Transcription factor bHLH129;
Basic helix-loop-helix protein 129;
Transcription factor EN 73;
bHLH transcription factor bHLH129;
Q9SX73
(KIP1L_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Kinase-interacting family protein;
Q9FFZ2
(PP402_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative pentatricopeptide repeat-containing protein At5g36300;
Q93VY3
(NAC72_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
NAC domain-containing protein 72;
Protein RESPONSIVE TO DESICCATION 26;
O22227
(MIZ1_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein MIZU-KUSSEI 1;
Q9ZUN0
(FB113_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Putative F-box protein At2g19630;
O23680
(TOC33_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Translocase of chloroplast 33, chloroplastic;
33 kDa chloroplast outer envelope protein;
Plastid protein import 1;
1 - 50 of 136324
Arabidopsis thaliana (Mouse-ear cress)

Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.

A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.

The genome of A. thaliana was sequenced in 2000.

"Arabidopsis thaliana", Wikipedia: The Free Encyclopedia

Protein models in Repository

From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.

For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.

You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_03 that was used for the most up to date SWISS-MODEL Repository.

Proteins in proteomeSequences modelledModels
27,44820,73038,611

Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.

Structural Coverage

The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.

Residue Coverage

This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.

Oligomeric State

Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.

Single Chain2-mer3-mer4-mer5-mer6-mer7-mer8-mer9-mer10-mer11-mer12-mer14-mer16-mer18-mer24-mer32-mer35-mer36-mer40-mer48-mer51-mer60-mer62-mer
31,9474,87135378129292673882031111941237111312163
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