Filter results by: Taxon Proteome
1 - 50 of 136324 UniProtKB matches
(85740 models, 6138 structures.)
UniProtKB AC
(Name)
UniProtKB Section
 
Homology Model
 
Experimental Structure
OrganismDescription
C0LGU7
(MDIS1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein MALE DISCOVERER 1;
Probable LRR receptor-like serine/threonine-protein kinase At5g45840;
C0LGQ4
(MDIS2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein MALE DISCOVERER 2;
Probable LRR receptor-like serine/threonine-protein kinase MRH1;
Protein MORPHOGENESIS OF ROOT HAIR 1;
Q9SSM2
(MDLL_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
(R)-mandelonitrile lyase-like;
Hydroxynitrile lyase-like;
A0A1P8AUY4
(MDN1_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Midasin;
Dynein-related AAA-ATPase MDN1;
MIDAS-containing protein 1;
Protein DWARF AND SHORT ROOT 1;
Q5XVC4
(MDP60_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Microtubule-destabilizing protein 60;
Q8W4P8
(MEB1_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Membrane protein of ER body 1;
F4KFS7
(MEB2_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Membrane protein of ER body 2;
Q8LPT3
(MEBL_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Membrane protein of ER body-like protein;
Q8LCU7
(MECR_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Enoyl-[acyl-carrier-protein] reductase, mitochondrial;
2-enoyl thioester reductase;
Q6ID77
(MED11_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 11;
H3K2Y6
(MED12_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 12;
Protein CENTER CITY;
Protein CRYPTIC PRECOCIOUS;
F4I096
(MED13_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 13;
Protein GRAND CENTRAL;
Protein MACCHI-BOU 2;
Q9SR02
(MED14_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 14;
Protein STRUWWELPETER;
F4JGZ1
(MED16_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 16;
Protein SENSITIVE TO FREEZING 6;
F4K460
(MED17_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 17;
Q9SJZ6
(MED18_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 18;
C0LU16
(MED21_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 21;
Mediator complex subunit 21;
RNAPII complex component SRB7;
F4I4P3
(MED23_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 23;
Q7XYY2
(MED25_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 25;
Phytochrome and flowering time 1 protein;
Phytochrome and flowering time regulatory protein 1;
Q8RWM3
(MED27_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 27;
Mediator of RNA polymerase II transcription subunit 3;
Q9LFA5
(MED28_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 28;
Q9FMV4
(MED30_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 30;
Q8VYB1
(MED31_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 31;
Mediator complex subunit 31;
Mediator complex subunit SOH1;
Q84VW5
(MED32_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 32;
Mediator of RNA polymerase II transcription subunit 2;
Q9LZ00
(MED4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 4;
F4IXJ7
(MED6_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 6;
Q9LYW3
(MED7A_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 7a;
Q9LZD7
(MED7B_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 7b;
Q4V3C1
(MED8_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 8;
Protein SETH 10;
Q8RWA2
(MED9_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Mediator of RNA polymerase II transcription subunit 9;
O65312
(MEDEA_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Histone-lysine N-methyltransferase MEDEA;
Maternal embryogenesis control protein;
Protein EMBRYO DEFECTIVE 173;
Protein FERTILIZATION-INDEPENDENT SEED 1;
Protein SET DOMAIN GROUP 5;
Q5XVF0
(MEE12_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
TATA box-binding protein-associated factor RNA polymerase I subunit B;
Central cell guidance protein;
Protein MATERNAL EFFECT EMBRYO ARREST 12;
TATA box-binding protein-associated factor 1B;
Q9XIM0
(MEE14_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
CCG-binding protein 1;
Protein MATERNAL EFFECT EMBRYO ARREST 14;
C0LGP2
(MEE39_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable LRR receptor-like serine/threonine-protein kinase MEE39;
Protein MATERNAL EFFECT EMBRYO ARREST 39;
Q9FRI0
(MEE8_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Transcription factor MEE8;
Basic helix-loop-helix protein 108;
Protein MATERNAL EFFECT EMBRYO ARREST 8;
Transcription factor EN 132;
bHLH transcription factor bHLH108;
Q9SJL6
(MEM11_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Membrin-11;
27 kDa Golgi SNARE protein;
Golgi SNAP receptor complex member 2-1;
Q9FK28
(MEM12_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Membrin-12;
Golgi SNAP receptor complex member 2-2;
Q0WUA3
(MENA_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic;
1,4-dihydroxy-2-naphthoate phytyltransferase;
1,4-dihydroxy-2-naphthoate polyprenyltransferase;
Protein ABERRANT CHLOROPLAST DEVELOPMENT 4;
menA-like protein;
Q8GYN9
(MENB_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal;
Enoyl-CoA hydratase/isomerase D;
Naphthoate synthase;
Q8VYJ1
(MENE_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal;
Acyl-activating enzyme 14;
O-succinylbenzoyl-CoA ligase;
Q3ED65
(MENG_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic;
Demethylphylloquinone methyltransferase;
Menaquinone biosynthesis methyltransferase ubiE-like protein;
Q5D892
(MER3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
DExH-box ATP-dependent RNA helicase DExH17;
ATP-dependent DNA helicase homolog MER3;
Protein ROCK-N-ROLLERS;
Q8S9K8
(MES10_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Methylesterase 10;
Q9FW03
(MES11_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative methylesterase 11, chloroplastic;
Q940H7
(MES12_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative methylesterase 12, chloroplastic;
F4IE65
(MES13_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative methylesterase 13, chloroplastic;
Q9FVW3
(MES14_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative methylesterase 14, chloroplastic;
F4I0K9
(MES15_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative methylesterase 15, chloroplastic;
Protein ROOT HAIR SPECIFIC 9;
O23512
(MES16_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
pFDCC methylesterase MES16;
Methylesterase 16;
Pheophorbidase;
Q9SG92
(MES17_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Methylesterase 17;
Methyl indole-3-acetic acid esterase;
1 - 50 of 136324
Arabidopsis thaliana (Mouse-ear cress)

Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.

A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.

The genome of A. thaliana was sequenced in 2000.

"Arabidopsis thaliana", Wikipedia: The Free Encyclopedia

Protein models in Repository

From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.

For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.

You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_02 that was used for the most up to date SWISS-MODEL Repository.

Proteins in proteomeSequences modelledModels
27,44820,68939,379

Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.

Structural Coverage

The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.

Residue Coverage

This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.

Oligomeric State

Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.

Single Chain2-mer3-mer4-mer5-mer6-mer7-mer8-mer9-mer10-mer11-mer12-mer14-mer16-mer18-mer24-mer32-mer35-mer36-mer40-mer48-mer51-mer60-mer62-mer
32,5484,98935680231304654082031161941277111322173
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