UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q84TI3 (OBE4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein OBERON 4; Protein TITANIA 1; | |
P0CJ42 (OCISA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative inactive (E)-beta-ocimene synthase, chloroplastic; Inactive (E,E)-alpha-farnesene synthase; Inactive terpenoid synthase 2; | |
Q9SVC4 (OEP7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Outer envelope membrane protein 7; | |
Q9FIZ7 (OPLA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 5-oxoprolinase 1; 5-oxo-L-prolinase; Protein OXOPROLINASE 1; Pyroglutamase; | |
Q9LHK3 (OST4A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4A; | |
Q8L986 (OST4B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4B; | |
Q9SF57 (OST4C_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4C; | |
P0DKJ0 (P160B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peptide encoded by miPEP160b; | |
P0DKJ1 (P164A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peptide encoded by miPEP164a; | |
P0DKI9 (P165A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peptide encoded by miPEP165a; | |
Q9SL76 (P2C19_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein; Probable protein phosphatase 2C 19; AtPP2C19; 3.1.3.16; Probable inactive cyclic nucleotide-dependent protein kinase At2g20050; | |
P0DKJ2 (P319A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peptide encoded by miPEP319a; | |
Q9SXA1 (P4KA1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphatidylinositol 4-kinase alpha 1; Phosphatidylinositol 4-OH kinase alpha1; | |
Q9FMJ0 (P4KB1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphatidylinositol 4-kinase beta 1; Phosphatidylinositol 4-OH kinase beta1; | |
Q0WPX9 (P4KB2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphatidylinositol 4-kinase beta 2; Phosphatidylinositol 4-OH kinase beta2; | |
F4KE59 (PAIP2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein PARALOG OF AIPP2; PHD finger-containing protein 2; | |
F4K4D6 (PDP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | PWWP domain-containing protein 1; | |
Q9LT02 (PDR2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable manganese-transporting ATPase PDR2; Protein MALE GAMETOGENESIS IMPAIRED ANTHERS; Protein PHOSPHATE DEFICIENCY RESPONSE 2; | |
B6EUB3 (PDS5A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Sister chromatid cohesion protein PDS5 homolog A; Precocious dissociation of sisters protein 5-A; | |
F4I735 (PDS5B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Sister chromatid cohesion protein PDS5 homolog B; Precocious dissociation of sisters protein 5-B; | |
Q9SSL9 (PEPR1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Leucine-rich repeat receptor-like protein kinase PEPR1; Elicitor peptide 1 receptor 1; | |
Q9FZ59 (PEPR2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Leucine-rich repeat receptor-like protein kinase PEPR2; Elicitor peptide 1 receptor 2; | |
P56775 (PETG_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cytochrome b6-f complex subunit 5; Cytochrome b6-f complex subunit PetG; Cytochrome b6-f complex subunit V; | |
P56776 (PETL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cytochrome b6-f complex subunit 6; Cytochrome b6-f complex subunit PetL; Cytochrome b6-f complex subunit VI; | |
P61039 (PETN_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cytochrome b6-f complex subunit 8; Cytochrome b6-f complex subunit PetN; Cytochrome b6-f complex subunit VIII; | |
Q9FNP1 (PEX1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxisomal ATPase PEX1; Peroxin-1; Peroxisome biogenesis protein 1; | |
F4IDB2 (PHL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING; | |
P14712 (PHYA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phytochrome A; Protein ELONGATED HYPOCOTYL 8; Protein FAR RED ELONGATED 1; Protein FAR RED ELONGATED HYPOCOTYL 2; | |
P14714 (PHYC_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phytochrome C; | |
P42497 (PHYD_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phytochrome D; | |
P42498 (PHYE_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phytochrome E; | |
Q15KI9 (PHYLO_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein PHYLLO, chloroplastic; Inactive isochorismate synthase; MENF; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; 2.2.1.9; MEND; o-succinylbenzoate synthase; 4.2.1.113; MENC; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; 4.2.99.20; MENH; | |
A0A1P8BH59 (PICBP_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Calmodulin binding protein PICBP; Pathogen-induced CaM-binding protein; | |
Q7X9V2 (PIE1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1; Independent early flowering 1 protein; Protein CHROMATIN REMODELING 13; | |
F4IN58 (PIEZO_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Piezo-type mechanosensitive ion channel homolog; | |
Q5S2C3 (PIR_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein PIR; PIR of plants; Protein KLUNKER; Protein PIROGI; | |
Q9S775 (PKL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | CHD3-type chromatin-remodeling factor PICKLE; Protein CHROMATIN REMODELING 6; Protein GYMNOS; | |
P93733 (PLDB1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phospholipase D beta 1; | |
Q9LRZ5 (PLDZ1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phospholipase D zeta 1; Phospholipase D p1; Phospholipase D1 PHOX and PX-containing domain protein; | |
Q9M9W8 (PLDZ2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phospholipase D zeta 2; Phospholipase D p2; Phospholipase D2 PHOX and PX-containing domain protein; | |
Q8LLV8 (PLS_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peptide POLARIS; Protein expressed in embryo 101; | |
F4K5K6 (PMIR1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1; | |
F4I6M1 (POLIA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DNA polymerase I A, chloroplastic/mitochondrial; DNA polymerase PolI-like B; Polymerase gamma 2; | |
Q84ND9 (POLIB_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DNA polymerase I B, chloroplastic/mitochondrial; DNA polymerase PolI-like B; Polymerase gamma 1; | |
Q94HW2 (POLR1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Retrovirus-related Pol polyprotein from transposon RE1; Retro element 1; Protease RE1; 3.4.23.-; Reverse transcriptase RE1; 2.7.7.49; Endonuclease RE1; | |
Q9ZT94 (POLR2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Retrovirus-related Pol polyprotein from transposon RE2; Retro element 2; Protease RE2; 3.4.23.-; Reverse transcriptase RE2; 2.7.7.49; Endonuclease RE2; | |
Q9SS83 (PP220_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At3g09040, mitochondrial; | |
Q5G1S8 (PP241_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At3g18110, chloroplastic; Protein EMBRYO DEFECTIVE 1270; | |
Q9SVP7 (PP307_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At4g13650; | |
Q9SZ52 (PP344_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At4g31850, chloroplastic; Protein PROTON GRADIENT REGULATION 3; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_01 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,598 | 38,175 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 39-mer | 40-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
31,573 | 4,870 | 345 | 743 | 29 | 288 | 63 | 40 | 8 | 20 | 3 | 111 | 19 | 4 | 1 | 22 | 2 | 1 | 1 | 1 | 13 | 1 | 2 | 12 | 3 |