UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q9SS31 (CML36_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable calcium-binding protein CML36; Calmodulin-like protein 36; | |
Q8W115 (PR1A3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | PRA1 family protein A3; | |
Q9SJE8 (ALMT2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Aluminum-activated malate transporter 2; | |
Q9LJK1 (FUT11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Glycoprotein 3-alpha-L-fucosyltransferase A; Core alpha-(1,3)-fucosyltransferase; Fuc-T C3; FucT1; FucTA; Fucosyltransferase 11; | |
O65785 (C71B3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cytochrome P450 71B3; | |
Q8L706 (SYT5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Synaptotagmin-5; NTMC2T2.1; Synaptotagmin E; | |
Q9LZK4 (MYB11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Transcription factor MYB11; Myb-related protein 11; Protein PRODUCTION OF FLAVONOL GLYCOSIDES 2; | |
Q9SI38 (ANR1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | MADS-box transcription factor ANR1; Protein AGAMOUS-LIKE 44; Protein ARABIDOPSIS NITRATE REGULATED 1; | |
F4INP9 (QWRF4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | QWRF motif-containing protein 4; | |
B5X4Z4 (NAGS2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable amino-acid acetyltransferase NAGS2, chloroplastic; N-acetylglutamate synthase 2; | |
Q9FFK1 (SYP31_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Syntaxin-31; | |
Q67Z93 (FRIG0_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Inactive protein FRIGIDA; | |
Q9FM14 (SIL11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | E3 ubiquitin-protein ligase SINA-like 11; RING-type E3 ubiquitin transferase SINA-like 11; Seven in absentia-like protein 11; | |
O81836 (SPL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SPOROCYTELESS; Protein NOZZLE; Transcription factor SPL; | |
Q94AH3 (NIPA4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable magnesium transporter NIPA4; | |
Q9ZU90 (SKI28_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | F-box protein SKIP28; Protein MATERNAL EFFECT EMBRYO ARREST 11; SKP1-interacting partner 28; | |
F4J4N3 (DIR17_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Dirigent protein 17; | |
Q9FF79 (NAS1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Nicotianamine synthase 1; S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase 1; | |
Q84WV9 (QPCT_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Glutaminyl-peptide cyclotransferase; Glutaminyl cyclase; | |
F4I1A6 (TPPC_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable trehalose-phosphate phosphatase C; Trehalose 6-phosphate phosphatase; | |
Q5BPL5 (EI24_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein EI24 homolog; | |
Q9LTC7 (BH034_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Transcription factor bHLH34; Basic helix-loop-helix protein 34; Transcription factor EN 135; bHLH transcription factor bHLH034; | |
O65679 (PILR3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable pinoresinol-lariciresinol reductase 3; lariciresinol reductase; | |
Q9LJF8 (FBL47_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | F-box/LRR-repeat protein At3g26922; | |
Q8GXU5 (SDI1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SULFUR DEFICIENCY-INDUCED 1; | |
Q8LG98 (OTU1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1; Deubiquitinating enzyme OTU1; | |
Q9S728 (PDF1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protodermal factor 1; | |
Q9LT91 (PER66_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxidase 66; ATP27a; | |
Q9SV30 (GATA8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | GATA transcription factor 8; | |
P48483 (PP13_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein phosphatase PP1 isozyme 3; Type one protein phosphatase 3; | |
Q9ZVT7 (RRP4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Exosome complex component RRP4 homolog; Ribosomal RNA-processing protein 4; | |
Q9LZS8 (GDL70_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | GDSL esterase/lipase At5g03600; | |
O65517 (SRS2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SHI RELATED SEQUENCE 2; Protein STYLISH 2; | |
Q9ZTA3 (AOP1C_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable 2-oxoglutarate-dependent dioxygenase AOP1; | |
P48486 (PP16_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein phosphatase PP1 isozyme 6; Type one protein phosphatase 6; | |
Q1EC66 (UBQ3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Polyubiquitin 3; Ubiquitin; | |
Q9SIW9 (FB107_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | F-box protein At2g16300; | |
Q9SN09 (SDN4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative small RNA degrading nuclease 4; | |
Q84WG3 (RBL16_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Rhomboid-like protein 16, chloroplastic; | |
Q941I2 (KAN3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable transcription factor KAN3; Protein KANADI 3; | |
Q9M3C8 (DIR24_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Dirigent protein 24; | |
Q56WH4 (HDT2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Histone deacetylase HDT2; HD-tuins protein 2; Histone deacetylase 2b; | |
Q8VZP4 (GAT10_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | GATA transcription factor 10; | |
O24412 (PSD7A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 26S proteasome non-ATPase regulatory subunit 7 homolog A; 26S proteasome regulatory subunit RPN8a; Protein ASYMMETRIC LEAVES ENHANCER 3; Protein MOV34; | |
Q9SFV2 (FHA2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | FHA domain-containing protein FHA2; Protein FORKHEAD-ASSOCIATED DOMAIN 2; | |
Q7XJK5 (AGL90_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Agamous-like MADS-box protein AGL90; | |
P0DI12 (SA1B1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | SUMO-activating enzyme subunit 1B-1; SUMO-activating enzyme subunit 1-2; Ubiquitin-like 1-activating enzyme E1A; | |
P0DI13 (SA1B2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | SUMO-activating enzyme subunit 1B-2; SUMO-activating enzyme subunit 1-2; Ubiquitin-like 1-activating enzyme E1A; | |
B3H707 (RBL17_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Rhomboid-like protein 17, chloroplastic; | |
Q94C32 (MRG1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein MRG1; MRG family protein 1; Morf Related Gene 1; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_03 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,730 | 38,611 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
31,947 | 4,871 | 353 | 781 | 29 | 292 | 67 | 38 | 8 | 20 | 3 | 111 | 19 | 4 | 1 | 23 | 7 | 1 | 1 | 13 | 1 | 2 | 16 | 3 |