UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q39208 (SC5D1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Delta(7)-sterol-C5(6)-desaturase 1; Delta(7)-sterol-C5-desaturase 1; Delta-7-C-5 sterol desaturase 1; Protein DWARF 7; Protein STEROL 1; | |
Q9SRK5 (LSF2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphoglucan phosphatase LSF2, chloroplastic; Phosphoglucan phosphatase like sex Four2; Protein LIKE SEX4 2; | |
Q8L936 (CAP16_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative clathrin assembly protein At4g40080; | |
Q9C6T0 (NIP31_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Aquaporin NIP3-1; NOD26-like intrinsic protein 3-1; | |
Q93YQ3 (PURU1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Formyltetrahydrofolate deformylase 1, mitochondrial; | |
Q9SVG0 (AVT3C_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Amino acid transporter AVT3C; Aromatic and neutral amino acid transporter-like protein 2; | |
F4I4B6 (EX84A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Exocyst complex component EXO84A; | |
O49605 (CP21A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peptidyl-prolyl cis-trans isomerase CYP21-1; Cyclophilin of 21 kDa 1; Cyclophilin-21-1; | |
Q8H0Z6 (IP5P3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Type IV inositol polyphosphate 5-phosphatase 3; | |
Q39041 (INVA4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Acid beta-fructofuranosidase 4, vacuolar; Acid invertase 4; Acid sucrose hydrolase 4; Vacuolar invertase 4; | |
Q8GZ87 (IQD28_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein IQ-DOMAIN 28; | |
Q9SH31 (GT16_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Xyloglucan-specific galacturonosyltransferase 1; Glycosyltransferase 16; Protein ROOT HAIR SPECIFIC 8; Protein exostosin; | |
P25071 (CML12_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Calmodulin-like protein 12; Touch-induced calmodulin-related protein 3; | |
Q6GKV1 (GET4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein GET4; Guided entry of tail-anchored proteins 4 homolog; | |
Q9LZS8 (GDL70_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | GDSL esterase/lipase At5g03600; | |
Q9LVM5 (TTHL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Uric acid degradation bifunctional protein TTL; Transthyretin-like protein; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; OHCU decarboxylase; 4.1.1.97; 5-hydroxyisourate hydrolase; HIU hydrolase; HIUHase; 3.5.2.17; | |
Q9FVV9 (NAP5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable non-intrinsic ABC protein 5; MRP-related protein 2; | |
Q9LT91 (PER66_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxidase 66; ATP27a; | |
Q9ZVT7 (RRP4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Exosome complex component RRP4 homolog; Ribosomal RNA-processing protein 4; | |
Q941I2 (KAN3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable transcription factor KAN3; Protein KANADI 3; | |
O80630 (DIR9_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Dirigent protein 9; | |
O65517 (SRS2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SHI RELATED SEQUENCE 2; Protein STYLISH 2; | |
Q9CA28 (TKPR2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Tetraketide alpha-pyrone reductase 2; Protein CINNAMOYL-COA REDUCTASE-LIKE 6; | |
Q8LDU1 (HOZ_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Non-canonical heme oxygenase HOZ, chloroplastic; Protein HOMOLOG OF HugZ; | |
Q9SKP9 (PRP2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Proline-rich protein 2; | |
Q9M2J0 (MCC20_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | MATH domain and coiled-coil domain-containing protein At3g58260; RTM3-like protein At3g58260; | |
Q93Z37 (BIG1E_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein BIG GRAIN 1-like E; | |
Q9ZW82 (PRNL2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pirin-like protein 2; PIRIN2; Pirin-like protein At2g43120; | |
P48484 (PP14_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein phosphatase PP1 isozyme 4; Type one protein phosphatase 4; | |
Q38826 (IAA8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Auxin-responsive protein IAA8; Indoleacetic acid-induced protein 8; | |
F4JF35 (OEP36_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Outer envelope protein 36, chloroplastic; | |
Q9C7Z1 (G2OX4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Gibberellin 2-beta-dioxygenase 4; GA 2-oxidase 4; Gibberellin 2-beta-hydroxylase 4; Gibberellin 2-oxidase 4; | |
Q9LT27 (YCED1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic; 23S rRNA accumulation protein YCED; Protein DUF177A; | |
Q9FJK3 (AGL80_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Agamous-like MADS-box protein AGL80; | |
Q43735 (PER27_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxidase 27; ATP12a; PRXR7; | |
Q9SS67 (PER28_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxidase 28; ATP39; | |
O48721 (HEM4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Uroporphyrinogen-III synthase, chloroplastic; Hydroxymethylbilane hydrolyase [cyclizing]; Uroporphyrinogen-III cosynthase; | |
Q9ZUS8 (MAKR3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable membrane-associated kinase regulator 3; | |
Q9MA41 (CTL1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Chitinase-like protein 1; Protein ANION ALTERED ROOT MORPHOLOGY; Protein ECTOPIC DEPOSITION OF LIGNIN IN PITH 1; Protein ECTOPIC ROOT HAIR 2; Protein POM-POM1; Protein SENSITIVE TO HOT TEMPERATURES 2; | |
Q9SJA8 (WRK17_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable WRKY transcription factor 17; WRKY DNA-binding protein 17; | |
Q9M2H5 (MCC29_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | MATH domain and coiled-coil domain-containing protein At3g58410; RTM3-like protein At3g58410; | |
Q9SE45 (ANXD3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Annexin D3; AnnAt3; | |
Q5XF11 (FB248_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | F-box protein At4g35930; | |
Q9C7P4 (C3H9_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative zinc finger CCCH domain-containing protein 9; | |
Q84J75 (PG2B1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Geranylgeranyl transferase type-2 subunit beta 1; Geranylgeranyl transferase type II subunit beta 1; Rab geranylgeranyl transferase beta subunit 1; | |
Q6NMC6 (ABIL3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein ABIL3; Abl interactor-like protein 3; | |
Q9M9Q9 (PER5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxidase 5; | |
Q8VZS0 (PNC2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxisomal adenine nucleotide carrier 2; | |
Q9LVR5 (MCU6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Chloroplastic calcium uniporter protein; Calcium uniporter protein 6, chloroplastic; | |
F4IN23 (BZP34_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Basic leucine zipper 34; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,689 | 39,379 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
32,548 | 4,989 | 356 | 802 | 31 | 304 | 65 | 40 | 8 | 20 | 3 | 116 | 19 | 4 | 1 | 27 | 7 | 1 | 1 | 13 | 2 | 2 | 17 | 3 |