UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q9LRZ2 (FB147_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative F-box protein At3g16820; | |
Q9LXQ0 (FB339_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable F-box protein At3g44130; | |
Q9LW31 (FUS3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | B3 domain-containing transcription factor FUS3; Protein FUSCA3; | |
Q9M8S7 (ARS1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein ABA AND ROS SENSITIVE 1; | |
Q8LF80 (CKB21_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cyclin-dependent kinase B2-1; | |
Q8GYC7 (PGL1B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | PGR5-like protein 1B, chloroplastic; Ferredoxin-plastoquinone reductase 2; | |
F4I274 (PHL8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Myb family transcription factor PHL8; Protein PHR1-LIKE 8; | |
Q9SD71 (SGIP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | E3 ubiquitin-protein ligase SGIP1; SGS3-INTERACTING PROTEIN 1; | |
Q07100 (PP2A3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein phosphatase PP2A-3 catalytic subunit; Protein phosphatase 2A isoform 3; | |
P48578 (PP2A4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein phosphatase PP2A-4 catalytic subunit; Protein phosphatase 2A isoform 4; | |
Q9SB52 (PUMP4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mitochondrial uncoupling protein 4; Mitochondrial dicarboxylate carrier 2; | |
Q9SJY5 (PUMP5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mitochondrial uncoupling protein 5; Mitochondrial dicarboxylate carrier 1; | |
Q9LNL1 (WAXS8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable long-chain-alcohol O-fatty-acyltransferase 8; Wax synthase 8; | |
Q8H0Y8 (WRK41_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable WRKY transcription factor 41; WRKY DNA-binding protein 41; | |
F4J469 (TI22L_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein TIC 22-like, chloroplastic; Translocon at the inner envelope membrane of chloroplasts 22-III; | |
Q7XA73 (TIF4A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein TIFY 4A; Protein PEAPOD 1; | |
Q8RV83 (Y2172_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | B3 domain-containing protein At2g31720; Protein AUXIN RESPONSE FACTOR 70; | |
Q9LXQ7 (FB209_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative F-box protein At3g58950; | |
Q9LH83 (AATP6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | AAA-ATPase At3g28520; | |
Q9M903 (TGD4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic; Protein PIGMENT DEFECTIVE 320; | |
Q9LIB3 (BAG8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | BAG family molecular chaperone regulator 8, chloroplastic; Bcl-2-associated athanogene 8; | |
O64864 (LTG13_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Non-specific lipid transfer protein GPI-anchored 13; Protein YELLOW-LEAF-SPECIFIC GENE 3; Xylogen-like protein 9; | |
F4HWQ8 (CVIF1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cell wall / vacuolar inhibitor of fructosidase 1; | |
P92556 (M1260_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Uncharacterized mitochondrial protein AtMg01260; ORF205; | |
Q84WE4 (PMEI3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pectinesterase inhibitor 3; Pectin methylesterase inhibitor 3; | |
Q9FI17 (ARAE4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative UDP-arabinose 4-epimerase 4; UDP-D-xylose 4-epimerase 4; | |
Q9STI6 (GAE5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | UDP-glucuronate 4-epimerase 5; UDP-glucuronic acid epimerase 5; | |
Q9FVV9 (NAP5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable non-intrinsic ABC protein 5; MRP-related protein 2; | |
Q9LJL4 (IPT8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Adenylate isopentenyltransferase 8, chloroplastic; Adenylate dimethylallyltransferase 8; Cytokinin synthase 8; Plant growth activator 22; | |
F4HPY8 (ALKR6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable aldo-keto reductase 6; | |
Q8GXL7 (GAT24_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | GATA transcription factor 24; Protein TIFY 2B; ZIM-like 1 protein; | |
Q94ID2 (IPT5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Adenylate isopentenyltransferase 5, chloroplastic; Adenylate dimethylallyltransferase 5; Cytokinin synthase 5; | |
F4JGP6 (LPXD1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable UDP-3-O-acylglucosamine N-acyltransferase 1, mitochondrial; Protein LIPID X D1; | |
Q9SKT4 (FTCDL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Formiminotransferase cyclodeaminase-like protein; | |
P82715 (PPD5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | PsbP domain-containing protein 5, chloroplastic; OEC23-like protein 6; PsbP-related thylakoid lumenal protein 4; Thylakoid lumenal 35.8 kDa protein; | |
Q6NQK9 (CCB4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic; | |
Q9LQ32 (GXM3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Glucuronoxylan 4-O-methyltransferase 3; | |
Q9LV52 (HSFC1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Heat stress transcription factor C-1; AtHsf-08; | |
Q9FLL0 (AGL75_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Agamous-like MADS-box protein AGL75; | |
Q9M5J8 (PGIP2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Polygalacturonase inhibitor 2; Polygalacturonase-inhibiting protein 2; | |
O80928 (DOF24_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Dof zinc finger protein DOF2.4; Protein PHLOEM EARLY DOF 1; | |
Q84JL7 (VTE7_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Alpha/beta hydrolase domain-containing protein VTE7; Protein VITAMIN E DEFICIENT 7; | |
Q501G6 (CSPLY_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | CASP-like protein 4A2; | |
Q9ZW81 (BH129_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Transcription factor bHLH129; Basic helix-loop-helix protein 129; Transcription factor EN 73; bHLH transcription factor bHLH129; | |
Q9SX73 (KIP1L_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Kinase-interacting family protein; | |
Q9FFZ2 (PP402_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative pentatricopeptide repeat-containing protein At5g36300; | |
Q93VY3 (NAC72_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | NAC domain-containing protein 72; Protein RESPONSIVE TO DESICCATION 26; | |
O22227 (MIZ1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein MIZU-KUSSEI 1; | |
Q9ZUN0 (FB113_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative F-box protein At2g19630; | |
O23680 (TOC33_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Translocase of chloroplast 33, chloroplastic; 33 kDa chloroplast outer envelope protein; Plastid protein import 1; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_03 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,730 | 38,611 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
31,947 | 4,871 | 353 | 781 | 29 | 292 | 67 | 38 | 8 | 20 | 3 | 111 | 19 | 4 | 1 | 23 | 7 | 1 | 1 | 13 | 1 | 2 | 16 | 3 |