| UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
|---|---|---|---|---|
| Q9SA60 (PPR6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At1g03100, mitochondrial; | |
| O64770 (Y1649_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | G-type lectin S-receptor-like serine/threonine-protein kinase At1g61490; | |
| Q8GXP1 (MAG2L_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | RINT1-like protein MAG2L; Protein MAIGO 2 homolog; Protein MAIGO 2-like; | |
| Q9SYA0 (Y1150_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | G-type lectin S-receptor-like serine/threonine-protein kinase At1g61500; | |
| O81028 (PP171_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At2g26790, mitochondrial; | |
| P93042 (RHD3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein ROOT HAIR DEFECTIVE 3; Protein FRAGILE FIBER 4; Protein SEY1 homolog 1; | |
| Q9FJW6 (PP451_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At5g67570, chloroplastic; Protein DELAYED GREENING 1; Protein EMBRYO DEFECTIVE 1408; | |
| Q8LFN2 (Y3037_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770; | |
| Q9LM76 (PUB44_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | U-box domain-containing protein 44; Plant U-box protein 44; Protein SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1; RING-type E3 ubiquitin transferase PUB44; | |
| O64782 (SD129_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29; Protein LIPOOLIGOSACCHARIDE-SPECIFIC REDUCED ELICITATION; S-domain-1 (SD1) receptor kinase 29; | |
| Q9LZS3 (GLGB2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic; Branching enzyme 2; Starch-branching enzyme 2-2; | |
| Q9FYC1 (CHX4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cation/H(+) antiporter 4; Protein CATION/H+ EXCHANGER 4; | |
| Q8VY77 (TGD5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic; | |
| Q9LUA1 (CLE27_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | CLAVATA3/ESR (CLE)-related protein 27; CLE27p; | |
| Q2V304 (DF220_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Defensin-like protein 220; | |
| Q2V4F4 (DF269_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Defensin-like protein 269; | |
| Q9SU24 (ORC1B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Origin of replication complex subunit 1B; Origin recognition complex 1b protein; Protein UNFERTILIZED EMBRYO SAC 13; | |
| P82761 (DEF83_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative defensin-like protein 83; Putative low-molecular-weight cysteine-rich protein 46; | |
| Q7XZU2 (SAC3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphoinositide phosphatase SAC3; Phosphatidylinositol 3,5-bisphosphate 5-phosphatase SAC3; Protein SUPPRESSOR OF ACTIN 3; SAC domain protein 3; | |
| Q8RWZ7 (VHAA1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | V-type proton ATPase subunit a1; V-type proton ATPase 95 kDa subunit a isoform 1; Vacuolar H(+)-ATPase subunit a isoform 1; Vacuolar proton pump subunit a1; Vacuolar proton translocating ATPase 95 kDa subunit a isoform 1; | |
| Q2V334 (DEF82_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Defensin-like protein 82; | |
| Q2V306 (DF221_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative defensin-like protein 221; | |
| Q6NMS3 (DEF95_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Defensin-like protein 95; | |
| Q9M1Z3 (LSM6A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Sm-like protein LSM6A; U6 snRNA-associated Sm-like protein LSM6A; | |
| Q4VP07 (LUR16_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein LURE 1.6; Cysteine-Rich Peptide 810_1.6; Defensin-like protein 215; | |
| Q8VZM7 (POLL1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative ion channel POLLUX-like 1; | |
| Q4VP10 (LUR13_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein LURE 1.3; Cysteine-Rich Peptide 810_1.3; Defensin-like protein 214; | |
| Q2V476 (DF104_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative defensin-like protein 104; | |
| P82717 (DF145_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative defensin-like protein 145; Putative low-molecular-weight cysteine-rich protein 2; | |
| Q9FJG0 (SAU20_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Auxin-responsive protein SAUR20; Protein SMALL AUXIN UP RNA 20; | |
| Q00762 (A9_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Tapetum-specific protein A9; | |
| Q9SRX6 (LEA2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Late embryogenis abundant protein 2; | |
| Q8L8Y3 (PCEP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Precursor of CEP1; C-terminally encoded peptide 1; CEP1; | |
| Q9SAF0 (ORP1D_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Oxysterol-binding protein-related protein 1D; OSBP-related protein 1D; | |
| Q8L850 (PI5K9_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphatidylinositol 4-phosphate 5-kinase 9; 1-phosphatidylinositol 4-phosphate kinase 9; Diphosphoinositide kinase 9; PtdIns(4)P-5-kinase 9; | |
| Q9SJ20 (RIR1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Ribonucleoside-diphosphate reductase large subunit; Protein DEFECTIVE IN POLLEN DNA DEGRADATION 2; Ribonucleoside-diphosphate reductase R1 subunit; | |
| P42339 (PI3K_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphatidylinositol 3-kinase VPS34; PI3-kinase VPS34; PtdIns-3-kinase VSP34; | |
| Q58P71 (CHX8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cation/H(+) antiporter 8; Protein CATION/H+ EXCHANGER 8; | |
| Q0WPJ7 (RF298_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative E3 ubiquitin-protein ligase RF298; RING finger protein 298; RING-type E3 ubiquitin transferase RF298; | |
| O64793 (Y1675_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520; | |
| Q9FKZ1 (DRL42_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable disease resistance protein At5g66900; | |
| Q8GX92 (CHX6A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cation/H(+) antiporter 6A; Protein CATION/H+ EXCHANGER 6a; | |
| Q9LZ25 (DRL30_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable disease resistance protein At5g04720; | |
| F4I6G4 (JMJ18_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Lysine-specific demethylase JMJ18; Jumonji domain-containing protein 18; Lysine-specific histone demethylase JMJ18; [histone H3]-trimethyl-L-lysine(4) monodemethylase JMJ18; | |
| Q9ZQ47 (GRDP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Glycine-rich domain-containing protein 1; | |
| Q9FFK6 (NUP88_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Nuclear pore complex protein NUP88; Nucleoporin 88; Protein EMBRYO DEFECTIVE 2789; Protein MODIFIER OF SNC1,7; | |
| Q9SZT4 (OSC41_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Hyperosmolality-gated Ca2+ permeable channel 4.1; | |
| O22823 (LSM6B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Sm-like protein LSM36B; U6 snRNA-associated Sm-like protein LSM6B; | |
| Q8VY16 (CDP1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Plastid division protein CDP1, chloroplastic; ARC6-homolog protein; Protein CHLOROPLAST DIVISION SITE POSITIONING 1; Protein PARALOG OF ARC6; Protein STROMULE BIOGENESIS ALTERED 2; | |
| Q9FMQ1 (PP376_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At5g12100, mitochondrial; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_04 that was used for the most up to date SWISS-MODEL Repository.
| Proteins in proteome | Sequences modelled | Models |
| 27,448 | 20,841 | 38,762 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
| Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 15-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 51-mer | 60-mer | 62-mer |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32,199 | 4,693 | 367 | 774 | 30 | 318 | 69 | 48 | 8 | 19 | 3 | 104 | 20 | 3 | 40 | 1 | 23 | 8 | 1 | 1 | 13 | 1 | 2 | 14 | 3 |
