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Filter results by: Taxon Proteome
1 - 50 of 136324 UniProtKB matches
(83966 models, 6138 structures.)
UniProtKB AC
(Name)
UniProtKB Section
 
Homology Model
 
Experimental Structure
OrganismDescription
Q39208
(SC5D1_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Delta(7)-sterol-C5(6)-desaturase 1;
Delta(7)-sterol-C5-desaturase 1;
Delta-7-C-5 sterol desaturase 1;
Protein DWARF 7;
Protein STEROL 1;
Q9SRK5
(LSF2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Phosphoglucan phosphatase LSF2, chloroplastic;
Phosphoglucan phosphatase like sex Four2;
Protein LIKE SEX4 2;
Q8L936
(CAP16_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative clathrin assembly protein At4g40080;
Q9C6T0
(NIP31_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Aquaporin NIP3-1;
NOD26-like intrinsic protein 3-1;
Q93YQ3
(PURU1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Formyltetrahydrofolate deformylase 1, mitochondrial;
Q9SVG0
(AVT3C_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Amino acid transporter AVT3C;
Aromatic and neutral amino acid transporter-like protein 2;
F4I4B6
(EX84A_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Exocyst complex component EXO84A;
O49605
(CP21A_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Peptidyl-prolyl cis-trans isomerase CYP21-1;
Cyclophilin of 21 kDa 1;
Cyclophilin-21-1;
Q8H0Z6
(IP5P3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Type IV inositol polyphosphate 5-phosphatase 3;
Q39041
(INVA4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Acid beta-fructofuranosidase 4, vacuolar;
Acid invertase 4;
Acid sucrose hydrolase 4;
Vacuolar invertase 4;
Q8GZ87
(IQD28_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein IQ-DOMAIN 28;
Q9SH31
(GT16_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Xyloglucan-specific galacturonosyltransferase 1;
Glycosyltransferase 16;
Protein ROOT HAIR SPECIFIC 8;
Protein exostosin;
P25071
(CML12_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Calmodulin-like protein 12;
Touch-induced calmodulin-related protein 3;
Q6GKV1
(GET4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein GET4;
Guided entry of tail-anchored proteins 4 homolog;
Q9LZS8
(GDL70_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
GDSL esterase/lipase At5g03600;
Q9LVM5
(TTHL_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Uric acid degradation bifunctional protein TTL;
Transthyretin-like protein;
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase;
OHCU decarboxylase;
4.1.1.97;
5-hydroxyisourate hydrolase;
HIU hydrolase;
HIUHase;
3.5.2.17;
Q9FVV9
(NAP5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable non-intrinsic ABC protein 5;
MRP-related protein 2;
Q9LT91
(PER66_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Peroxidase 66;
ATP27a;
Q9ZVT7
(RRP4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Exosome complex component RRP4 homolog;
Ribosomal RNA-processing protein 4;
Q941I2
(KAN3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable transcription factor KAN3;
Protein KANADI 3;
O80630
(DIR9_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Dirigent protein 9;
O65517
(SRS2_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein SHI RELATED SEQUENCE 2;
Protein STYLISH 2;
Q9CA28
(TKPR2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Tetraketide alpha-pyrone reductase 2;
Protein CINNAMOYL-COA REDUCTASE-LIKE 6;
Q8LDU1
(HOZ_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Non-canonical heme oxygenase HOZ, chloroplastic;
Protein HOMOLOG OF HugZ;
Q9SKP9
(PRP2_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Proline-rich protein 2;
Q9M2J0
(MCC20_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
MATH domain and coiled-coil domain-containing protein At3g58260;
RTM3-like protein At3g58260;
Q93Z37
(BIG1E_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein BIG GRAIN 1-like E;
Q9ZW82
(PRNL2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Pirin-like protein 2;
PIRIN2;
Pirin-like protein At2g43120;
P48484
(PP14_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Serine/threonine-protein phosphatase PP1 isozyme 4;
Type one protein phosphatase 4;
Q38826
(IAA8_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Auxin-responsive protein IAA8;
Indoleacetic acid-induced protein 8;
F4JF35
(OEP36_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Outer envelope protein 36, chloroplastic;
Q9C7Z1
(G2OX4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Gibberellin 2-beta-dioxygenase 4;
GA 2-oxidase 4;
Gibberellin 2-beta-hydroxylase 4;
Gibberellin 2-oxidase 4;
Q9LT27
(YCED1_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic;
23S rRNA accumulation protein YCED;
Protein DUF177A;
Q9FJK3
(AGL80_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Agamous-like MADS-box protein AGL80;
Q43735
(PER27_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Peroxidase 27;
ATP12a;
PRXR7;
Q9SS67
(PER28_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Peroxidase 28;
ATP39;
O48721
(HEM4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Uroporphyrinogen-III synthase, chloroplastic;
Hydroxymethylbilane hydrolyase [cyclizing];
Uroporphyrinogen-III cosynthase;
Q9ZUS8
(MAKR3_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Probable membrane-associated kinase regulator 3;
Q9MA41
(CTL1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Chitinase-like protein 1;
Protein ANION ALTERED ROOT MORPHOLOGY;
Protein ECTOPIC DEPOSITION OF LIGNIN IN PITH 1;
Protein ECTOPIC ROOT HAIR 2;
Protein POM-POM1;
Protein SENSITIVE TO HOT TEMPERATURES 2;
Q9SJA8
(WRK17_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable WRKY transcription factor 17;
WRKY DNA-binding protein 17;
Q9M2H5
(MCC29_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
MATH domain and coiled-coil domain-containing protein At3g58410;
RTM3-like protein At3g58410;
Q9SE45
(ANXD3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Annexin D3;
AnnAt3;
Q5XF11
(FB248_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
F-box protein At4g35930;
Q9C7P4
(C3H9_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative zinc finger CCCH domain-containing protein 9;
Q84J75
(PG2B1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Geranylgeranyl transferase type-2 subunit beta 1;
Geranylgeranyl transferase type II subunit beta 1;
Rab geranylgeranyl transferase beta subunit 1;
Q6NMC6
(ABIL3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein ABIL3;
Abl interactor-like protein 3;
Q9M9Q9
(PER5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Peroxidase 5;
Q8VZS0
(PNC2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Peroxisomal adenine nucleotide carrier 2;
Q9LVR5
(MCU6_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Chloroplastic calcium uniporter protein;
Calcium uniporter protein 6, chloroplastic;
F4IN23
(BZP34_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Basic leucine zipper 34;
1 - 50 of 136324
Arabidopsis thaliana (Mouse-ear cress)

Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.

A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.

The genome of A. thaliana was sequenced in 2000.

"Arabidopsis thaliana", Wikipedia: The Free Encyclopedia

Protein models in Repository

From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.

For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.

You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_02 that was used for the most up to date SWISS-MODEL Repository.

Proteins in proteomeSequences modelledModels
27,44820,68939,379

Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.

Structural Coverage

The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.

Residue Coverage

This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.

Oligomeric State

Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.

Single Chain2-mer3-mer4-mer5-mer6-mer7-mer8-mer9-mer10-mer11-mer12-mer14-mer16-mer18-mer24-mer32-mer35-mer36-mer40-mer48-mer51-mer60-mer62-mer
32,5484,98935680231304654082031161941277111322173
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