UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q9SJK6 (WBC30_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative white-brown complex homolog protein 30; Putative non-intrinsic ABC protein 12; WBC-related protein 1; | |
Q9M291 (SC24B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein transport protein SEC24 B; Lst1-homolog protein A; Protein of the clone eighty-four; | |
P14714 (PHYC_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phytochrome C; | |
P42498 (PHYE_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phytochrome E; | |
Q9FPT1 (UBP12_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Ubiquitin C-terminal hydrolase 12; Deubiquitinating enzyme 12; Ubiquitin thioesterase 12; Ubiquitin-specific-processing protease 12; | |
Q9LV32 (RPD2B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DNA-directed RNA polymerase D subunit 2b; RNA polymerase IV subunit 2b; | |
Q9MAG3 (AB24G_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ABC transporter G family member 24; Probable white-brown complex homolog protein 25; | |
Q9LVQ5 (PP432_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein At5g55840; | |
Q84WU2 (UBP13_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Ubiquitin C-terminal hydrolase 13; Deubiquitinating enzyme 13; Ubiquitin thioesterase 13; Ubiquitin-specific-processing protease 13; | |
Q8L611 (SC31B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein transport protein SEC31 homolog B; SEC31-like protein B; | |
Q0WPX9 (P4KB2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Phosphatidylinositol 4-kinase beta 2; Phosphatidylinositol 4-OH kinase beta2; | |
D7SFH9 (LRL26_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4; Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2; 3.1.4.46; Glycerophosphodiester phosphodiesterase-like 2; ATGDPDL2; LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.6; 2.7.11.1; Probable receptor-like serine/threonine-protein kinase LRK10L-2.6; | |
F4JDI6 (KN12F_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Kinesin-like protein KIN-12F; | |
Q9FF46 (AB28G_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ABC transporter G family member 28; Putative white-brown complex homolog protein 29; | |
F4IM84 (DEXH5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DExH-box ATP-dependent RNA helicase DExH5, mitochondrial; | |
F4IBE4 (DRL10_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable disease resistance protein RF45; | |
P0DI16 (DRL44_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable disease resistance protein RDL5; | |
Q9SL76 (P2C19_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein; Probable protein phosphatase 2C 19; AtPP2C19; 3.1.3.16; Probable inactive cyclic nucleotide-dependent protein kinase At2g20050; | |
Q9FZ59 (PEPR2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Leucine-rich repeat receptor-like protein kinase PEPR2; Elicitor peptide 1 receptor 2; | |
Q8S3U9 (SEC5A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Exocyst complex component SEC5A; Exocyst complex component 2; | |
Q9C6A6 (RLP13_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Receptor-like protein 13; | |
Q0WLC6 (PP349_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Pentatricopeptide repeat-containing protein MRL1, chloroplastic; Protein MATURATION OF RBCL 1; | |
F4K6B8 (RGI4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4; Protein RECEPTOR OF RGF1 2; Protein RGF1 INSENSITIVE 4; Protein STERILITY-REGULATING KINASE MEMBER 2; | |
D1KF50 (SRS2L_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | ATP-dependent DNA helicase SRS2-like protein At4g25120; AtSRS2; DNA 3'-5' helicase At4g25120; | |
Q94AI7 (TPL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein TOPLESS; WUS-interacting protein 1; | |
Q9LNQ4 (ALA4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable phospholipid-transporting ATPase 4; Aminophospholipid flippase 4; | |
Q9SN90 (SMC22_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Structural maintenance of chromosomes protein 2-2; Chromosome-associated protein E-2; | |
F4JJP1 (Y4759_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | WEB family protein At4g27595, chloroplastic; | |
Q9LL84 (DNLI4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DNA ligase 4; DNA ligase IV; Polydeoxyribonucleotide synthase [ATP] 4; | |
Q9LVC0 (AGP14_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Arabinogalactan protein 14; Arabinogalactan peptide 14; | |
Q9LJD9 (AGP12_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Arabinogalactan protein 12; Arabinogalactan peptide 12; | |
Q2V4F6 (DF279_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative defensin-like protein 279; | |
O49471 (RPP2D_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable disease resistance protein At4g19530; | |
P0DKL4 (S130A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Spliceosome-associated protein 130 A; Pre-mRNA-splicing factor SF3b 130 kDa subunit A; | |
P0DKL6 (S130B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Spliceosome-associated protein 130 B; Pre-mRNA-splicing factor SF3b 130 kDa subunit B; | |
O64728 (STI_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein STICHEL; | |
Q8L5Y6 (CAND1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cullin-associated NEDD8-dissociated protein 1; Cullin-associated and neddylation-dissociated protein 1; Protein ENHANCER OF TIR1-1 AUXIN RESISTANCE 2; Protein HEMIVENATA; | |
Q9SGG3 (ALA5_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable phospholipid-transporting ATPase 5; Aminophospholipid flippase 5; | |
Q9LXI8 (ZPR3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein LITTLE ZIPPER 3; | |
O65607 (MSH3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DNA mismatch repair protein MSH3; MutS protein homolog 3; | |
Q9C9T3 (MZT1A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mitotic-spindle organizing protein 1A; GCP3-interacting protein 2; Mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1A; | |
Q9LYD9 (EMF1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein EMBRYONIC FLOWER 1; | |
Q8W103 (CHR24_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein CHROMATIN REMODELING 24; DNA excision repair protein CHR24; | |
F4HXQ7 (MYOB1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Myosin-binding protein 1; | |
Q9SZL9 (CSLD4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Cellulose synthase-like protein D4; | |
P18612 (KIN1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Stress-induced protein KIN1; | |
P0CJ42 (OCISA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative inactive (E)-beta-ocimene synthase, chloroplastic; Inactive (E,E)-alpha-farnesene synthase; Inactive terpenoid synthase 2; | |
P31169 (KIN2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Stress-induced protein KIN2; Cold-induced protein COR6.6; | |
Q9LVP0 (Y5639_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable leucine-rich repeat receptor-like protein kinase At5g63930; | |
Q9ZVX1 (UBC23_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable ubiquitin-conjugating enzyme E2 23; E2 ubiquitin-conjugating enzyme 23; Ubiquitin carrier protein 23; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_03 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,730 | 38,611 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
31,947 | 4,871 | 353 | 781 | 29 | 292 | 67 | 38 | 8 | 20 | 3 | 111 | 19 | 4 | 1 | 23 | 7 | 1 | 1 | 13 | 1 | 2 | 16 | 3 |