Filter results by: Taxon Proteome
1 - 50 of 136337 UniProtKB matches
(81286 models, 5341 structures.)
UniProtKB AC
(Name)
UniProtKB Section
 
Homology Model
 
Experimental Structure
OrganismDescription
Q9SRE0
(5FCLL_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
5-formyltetrahydrofolate cyclo-ligase-like protein COG0212;
Protein CLUSTERS OF ORTHOLOGOUS GROUP 212;
Q8L7L5
(AHL11_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
AT-hook motif nuclear-localized protein 11;
Q9M5P3
(CCDA_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Cytochrome c-type biogenesis ccda-like chloroplastic protein;
Cytochrome b6f biogenesis protein CCDA;
Q8LAY8
(P2C69_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable protein phosphatase 2C 69;
Q9ZQ60
(FB102_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
F-box protein At2g14290;
Q9M836
(LSH2_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2;
Protein ORGAN BOUNDARY 3;
Q9LY14
(MSRA3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Peptide methionine sulfoxide reductase A3;
Peptide-methionine (S)-S-oxide reductase;
Protein-methionine-S-oxide reductase;
Q9FIF7
(PP435_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic;
Protein ORGANELLE TRANSCRIPT PROCESSING 80;
Q84MC0
(UGPI4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Uncharacterized GPI-anchored protein At3g06035;
O81316
(SCL6_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Scarecrow-like protein 6;
GRAS family protein 22;
SCL6-IV;
Q9CB01
(RABF1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Ras-related protein RABF1;
Ras-related protein Ara-6;
Ras-related protein Rab5C;
Q9LFR1
(PTR50_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein NRT1/ PTR FAMILY 5.8;
Q6PQQ3
(AIL5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
AP2-like ethylene-responsive transcription factor AIL5;
Protein AINTEGUMENTA-LIKE 5;
Q9LQC9
(CSLA3_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Probable glucomannan 4-beta-mannosyltransferase 3;
Cellulose synthase-like protein A3;
Glucomannan synthase;
Mannan synthase 3;
O49399
(PP321_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Pentatricopeptide repeat-containing protein At4g18840;
Q0WWW9
(XYLL3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
D-xylose-proton symporter-like 3, chloroplastic;
O04905
(KCY3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
UMP-CMP kinase 3;
Deoxycytidylate kinase;
Uridine monophosphate/cytidine monophosphate kinase;
F4HUK6
(AAE1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Butanoate--CoA ligase AAE1;
4-methylpentanoate--CoA ligase AAE2;
AMP-binding protein 1;
Acyl-activating enzyme 1, peroxisomal;
Hexanoate--CoA ligase CCL3;
Pentanoate--CoA ligase CCL3;
Q9ASV6
(RR20_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Small ribosomal subunit protein bS20c;
30S ribosomal protein S20, chloroplastic;
Q9LQS1
(AAE8_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Probable acyl-activating enzyme 8;
AMP-binding protein 8;
Q38903
(RAC2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Rac-like GTP-binding protein ARAC2;
GTPase protein ROP7;
Q9SQR5
(SINE2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein SINE2;
Q94AX3
(LTG16_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Non-specific lipid transfer protein GPI-anchored 16;
Protein EMBRYO SAC DEVELOPMENT ARREST 4;
Xylogen like protein 6;
Q5XV67
(DMP7_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein DMP7;
Q8GXS3
(CFIS2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Pre-mRNA cleavage factor Im 25 kDa subunit 2;
O49717
(CDPKF_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Calcium-dependent protein kinase 15;
Q9SCS6
(HR4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
RPW8-like protein 4;
Q9FE67
(ERF80_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Ethylene-responsive transcription factor 9;
Ethylene-responsive element-binding factor 9;
Q9LP65
(CAR5_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein C2-DOMAIN ABA-RELATED 5;
Q67XT3
(SPC24_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Kinetochore protein SPC24 homolog;
Protein MERISTEM UNSTRUCTURED;
Q9M1E1
(PTR38_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein NRT1/ PTR FAMILY 2.6;
Probable nitrate excretion transporter 2;
Protein NAXT1-like 1;
Q9LIN9
(PAGR_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein PECTIC ARABINOGALACTAN SYNTHESIS-RELATED;
O-fucosyltransferase 26;
O-fucosyltransferase family protein;
Q9M084
(SYDC2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Aspartate--tRNA ligase 2, cytoplasmic;
Aspartyl-tRNA synthetase;
Protein IMPAIRED IN BABA-INDUCED DISEASE IMMUNITY 1;
O81058
(ASK19_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
SKP1-like protein 19;
Q9M1E2
(PTR37_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein NRT1/ PTR FAMILY 2.7;
Nitrate excretion transporter 1;
Q9SI13
(SFH10_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Phosphatidylinositol/phosphatidylcholine transfer protein SFH10;
Protein SEC FOURTEEN HOMOLOGS 10;
O80434
(LAC4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Laccase-4;
Benzenediol:oxygen oxidoreductase 4;
Diphenol oxidase 4;
Protein IRREGULAR XYLEM 12;
Urishiol oxidase 4;
Q67ZB3
(FRL3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
FRIGIDA-like protein 3;
Q8W4G3
(DTX46_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein DETOXIFICATION 46, chloroplastic;
Multidrug and toxic compound extrusion protein 46;
Protein EDS5 HOMOLOGUE;
Q8RXT4
(NEK4_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Serine/threonine-protein kinase Nek4;
NimA-related protein kinase 4;
Q3ECY6
(SDG41_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Protein SET DOMAIN GROUP 41;
Q9M2C3
(VITH3_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Vacuolar iron transporter homolog 3;
Protein NODULIN-LIKE 3;
Q84ZT9
(WVD2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Protein WAVE-DAMPENED 2;
Q67XD9
(CINV2_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Alkaline/neutral invertase CINV2;
Alkaline/neutral invertase I;
Cytosolic invertase 2;
Q1PFB9
(AGC17_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Serine/threonine-protein kinase AGC1-7;
AGC serine/threonine-protein kinase subfamily 1 member 7;
O81126
(RSZ22_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Serine/arginine-rich splicing factor RSZ22;
RS-containing zinc finger protein 22;
Q95749
(RT03_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Small ribosomal subunit protein uS3m;
Ribosomal protein S3, mitochondrial;
P28147
(TBP1_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
TATA-box-binding protein 1;
TATA sequence-binding protein 1;
TATA-binding factor 1;
TATA-box factor 1;
Transcription initiation factor TFIID TBP-1 subunit;
Q8VZA1
(LAC11_ARATH)
Swiss-Prot
Arabidopsis thaliana
(Mouse-ear cress)
Laccase-11;
Benzenediol:oxygen oxidoreductase 11;
Diphenol oxidase 11;
Urishiol oxidase 11;
Q500V2
(FLY2_ARATH)
Swiss-ProtArabidopsis thaliana
(Mouse-ear cress)
Transmembrane E3 ubiquitin-protein ligase FLY2;
Protein FLYING SAUCER 2;
RING-type E3 ubiquitin transferase FLY2;
1 - 50 of 136337
Arabidopsis thaliana (Mouse-ear cress)

Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.

A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.

The genome of A. thaliana was sequenced in 2000.

"Arabidopsis thaliana", Wikipedia: The Free Encyclopedia

Protein models in Repository

From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.

For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.

You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2024_01 that was used for the most up to date SWISS-MODEL Repository.

Proteins in proteomeSequences modelledModels
27,44820,17937,235

Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.

Structural Coverage

The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.

Residue Coverage

This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.

Oligomeric State

Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.

Single Chain2-mer3-mer4-mer5-mer6-mer7-mer8-mer9-mer10-mer11-mer12-mer14-mer16-mer18-mer20-mer24-mer32-mer35-mer36-mer40-mer48-mer60-mer62-mer
30,3815,244351699302685732822468184112621111123
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