UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
C0LGU7 (MDIS1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein MALE DISCOVERER 1; Probable LRR receptor-like serine/threonine-protein kinase At5g45840; | |
C0LGQ4 (MDIS2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein MALE DISCOVERER 2; Probable LRR receptor-like serine/threonine-protein kinase MRH1; Protein MORPHOGENESIS OF ROOT HAIR 1; | |
Q9SSM2 (MDLL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | (R)-mandelonitrile lyase-like; Hydroxynitrile lyase-like; | |
A0A1P8AUY4 (MDN1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Midasin; Dynein-related AAA-ATPase MDN1; MIDAS-containing protein 1; Protein DWARF AND SHORT ROOT 1; | |
Q5XVC4 (MDP60_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Microtubule-destabilizing protein 60; | |
Q8W4P8 (MEB1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Membrane protein of ER body 1; | |
F4KFS7 (MEB2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Membrane protein of ER body 2; | |
Q8LPT3 (MEBL_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Membrane protein of ER body-like protein; | |
Q8LCU7 (MECR_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Enoyl-[acyl-carrier-protein] reductase, mitochondrial; 2-enoyl thioester reductase; | |
Q6ID77 (MED11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 11; | |
H3K2Y6 (MED12_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 12; Protein CENTER CITY; Protein CRYPTIC PRECOCIOUS; | |
F4I096 (MED13_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 13; Protein GRAND CENTRAL; Protein MACCHI-BOU 2; | |
Q9SR02 (MED14_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 14; Protein STRUWWELPETER; | |
F4JGZ1 (MED16_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 16; Protein SENSITIVE TO FREEZING 6; | |
F4K460 (MED17_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 17; | |
Q9SJZ6 (MED18_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 18; | |
C0LU16 (MED21_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 21; Mediator complex subunit 21; RNAPII complex component SRB7; | |
F4I4P3 (MED23_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 23; | |
Q7XYY2 (MED25_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 25; Phytochrome and flowering time 1 protein; Phytochrome and flowering time regulatory protein 1; | |
Q8RWM3 (MED27_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 27; Mediator of RNA polymerase II transcription subunit 3; | |
Q9LFA5 (MED28_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 28; | |
Q9FMV4 (MED30_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 30; | |
Q8VYB1 (MED31_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 31; Mediator complex subunit 31; Mediator complex subunit SOH1; | |
Q84VW5 (MED32_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 32; Mediator of RNA polymerase II transcription subunit 2; | |
Q9LZ00 (MED4_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 4; | |
F4IXJ7 (MED6_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 6; | |
Q9LYW3 (MED7A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 7a; | |
Q9LZD7 (MED7B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 7b; | |
Q4V3C1 (MED8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 8; Protein SETH 10; | |
Q8RWA2 (MED9_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Mediator of RNA polymerase II transcription subunit 9; | |
O65312 (MEDEA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Histone-lysine N-methyltransferase MEDEA; Maternal embryogenesis control protein; Protein EMBRYO DEFECTIVE 173; Protein FERTILIZATION-INDEPENDENT SEED 1; Protein SET DOMAIN GROUP 5; | |
Q5XVF0 (MEE12_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | TATA box-binding protein-associated factor RNA polymerase I subunit B; Central cell guidance protein; Protein MATERNAL EFFECT EMBRYO ARREST 12; TATA box-binding protein-associated factor 1B; | |
Q9XIM0 (MEE14_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | CCG-binding protein 1; Protein MATERNAL EFFECT EMBRYO ARREST 14; | |
C0LGP2 (MEE39_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable LRR receptor-like serine/threonine-protein kinase MEE39; Protein MATERNAL EFFECT EMBRYO ARREST 39; | |
Q9FRI0 (MEE8_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Transcription factor MEE8; Basic helix-loop-helix protein 108; Protein MATERNAL EFFECT EMBRYO ARREST 8; Transcription factor EN 132; bHLH transcription factor bHLH108; | |
Q9SJL6 (MEM11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Membrin-11; 27 kDa Golgi SNARE protein; Golgi SNAP receptor complex member 2-1; | |
Q9FK28 (MEM12_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Membrin-12; Golgi SNAP receptor complex member 2-2; | |
Q0WUA3 (MENA_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 2-carboxy-1,4-naphthoquinone phytyltransferase, chloroplastic; 1,4-dihydroxy-2-naphthoate phytyltransferase; 1,4-dihydroxy-2-naphthoate polyprenyltransferase; Protein ABERRANT CHLOROPLAST DEVELOPMENT 4; menA-like protein; | |
Q8GYN9 (MENB_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal; Enoyl-CoA hydratase/isomerase D; Naphthoate synthase; | |
Q8VYJ1 (MENE_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal; Acyl-activating enzyme 14; O-succinylbenzoyl-CoA ligase; | |
Q3ED65 (MENG_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic; Demethylphylloquinone methyltransferase; Menaquinone biosynthesis methyltransferase ubiE-like protein; | |
Q5D892 (MER3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DExH-box ATP-dependent RNA helicase DExH17; ATP-dependent DNA helicase homolog MER3; Protein ROCK-N-ROLLERS; | |
Q8S9K8 (MES10_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Methylesterase 10; | |
Q9FW03 (MES11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative methylesterase 11, chloroplastic; | |
Q940H7 (MES12_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative methylesterase 12, chloroplastic; | |
F4IE65 (MES13_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative methylesterase 13, chloroplastic; | |
Q9FVW3 (MES14_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative methylesterase 14, chloroplastic; | |
F4I0K9 (MES15_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Putative methylesterase 15, chloroplastic; Protein ROOT HAIR SPECIFIC 9; | |
O23512 (MES16_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | pFDCC methylesterase MES16; Methylesterase 16; Pheophorbidase; | |
Q9SG92 (MES17_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Methylesterase 17; Methyl indole-3-acetic acid esterase; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,689 | 39,379 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 40-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
32,548 | 4,989 | 356 | 802 | 31 | 304 | 65 | 40 | 8 | 20 | 3 | 116 | 19 | 4 | 1 | 27 | 7 | 1 | 1 | 13 | 2 | 2 | 17 | 3 |