UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
P0DKJ0 (P160B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peptide encoded by miPEP160b; | |
P0DKI9 (P165A_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peptide encoded by miPEP165a; | |
F4I1L3 (ACC2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Acetyl-CoA carboxylase 2; Biotin carboxylase; 6.3.4.14; | |
Q9M3G7 (ATM_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein kinase ATM; Ataxia telangiectasia mutated homolog; | |
Q9FKS4 (ATR_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein kinase ATR; Ataxia telangiectasia-mutated and Rad3-related homolog; DNA repair protein ATR; Rad3-like protein; | |
F4HZB2 (BCHA1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SPIRRIG; BEACH domain-containing protein A1; BEACH-domain homolog A1; | |
F4JHT3 (BCHA2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | BEACH domain-containing protein A2; BEACH-domain homolog A2; | |
F4I9T0 (BCHB_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | BEACH domain-containing protein B; BEACH-domain homolog B; | |
F4IG73 (BCHC2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | BEACH domain-containing protein C2; BEACH-domain homolog C2; | |
Q9SRU2 (BIG_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Auxin transport protein BIG; Protein ATTENUATED SHADE AVOIDANCE 1; Protein CORYMBOSA1; Protein DARK OVER-EXPRESSION OF CAB 1; Protein LOW PHOSPHATE-RESISTANT ROOT 1; Protein TRANSPORT INHIBITOR RESPONSE 3; Protein UMBRELLA 1; | |
F4IVL6 (GRV2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | DnaJ homolog subfamily C GRV2; Protein GRAVITROPISM DEFECTIVE 2; Protein GREEN FLUORESCENT SEED 2; Protein KATAMARI2; | |
Q6IMT0 (KIP_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein KINKY POLLEN; | |
Q27IK6 (KN12D_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Kinesin-like protein KIN-12D; Phragmoplast orienting kinesin 2; | |
P80826 (CWP02_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 65 kDa cell wall protein; | |
P80827 (CWP03_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 60 kDa cell wall protein; | |
P80830 (CWP06_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 42 kDa cell wall protein; | |
P80831 (CWP07_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 34 kDa cell wall protein; | |
P80832 (CWP08_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 31 kDa cell wall protein; | |
P80853 (CWP09_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 30 kDa cell wall protein; | |
P80833 (CWP11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 96 kDa cell wall protein; | |
P80834 (CWP12_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 52 kDa cell wall protein; | |
P80835 (CWP13_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 44 kDa cell wall protein; | |
P80836 (CWP14_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 36 kDa cell wall protein; | |
P80839 (CWP18_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 18 kDa cell wall protein; | |
P80840 (CWP19_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 17 kDa cell wall protein; | |
P80841 (CWP20_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 55 kDa cell wall protein; | |
P80843 (CWP22_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 68 kDa cell wall protein; | |
P80844 (CWP23_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 64 kDa cell wall protein; | |
P80845 (CWP24_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 36 kDa cell wall protein; | |
P80847 (CWP27_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 60 kDa cell wall protein; | |
P80848 (CWP28_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 48 kDa cell wall protein; | |
P80849 (CWP29_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 36 kDa cell wall protein; | |
P80850 (CWP30_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 33 kDa cell wall protein; | |
P80851 (CWP31_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 27 kDa cell wall protein; | |
P80852 (CWP32_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 31 kDa cell wall protein; | |
A0A1P8AUY4 (MDN1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Midasin; Dynein-related AAA-ATPase MDN1; MIDAS-containing protein 1; Protein DWARF AND SHORT ROOT 1; | |
F4JTS8 (NOV_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein NO VEIN; Protein EMBRYO DEFECTIVE 2597; | |
F4IHS2 (SYD_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Chromatin structure-remodeling complex protein SYD; ATP-dependent helicase SYD; Protein CHROMATIN REMODELING 3; Protein SPLAYED; | |
Q9FR53 (TOR_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Serine/threonine-protein kinase TOR; Protein TARGET OF RAPAMYCIN; | |
Q8GY23 (UPL1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | E3 ubiquitin-protein ligase UPL1; HECT-type E3 ubiquitin transferase UPL1; | |
Q8H0T4 (UPL2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | E3 ubiquitin-protein ligase UPL2; HECT-type E3 ubiquitin transferase UPL2; | |
Q6IMT1 (SAB_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Protein SABRE; Protein HYPERSENSITIVE TO PI STARVATION 4; | |
Q9LVL1 (PER68_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxidase 68; | |
O23913 (AOX1B_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Ubiquinol oxidase 1b, mitochondrial; Alternative oxidase 1b; | |
Q84WW2 (6PGL3_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | 6-phosphogluconolactonase 3, chloroplastic; Protein EMBRYO DEFECTIVE 2024; | |
Q9FYE1 (MCA9_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Metacaspase-9; Metacaspase-9 subunit p20; Metacaspase-9 subunit p10; Metacaspase 2f; AtMCP2f; | |
Q94AG6 (SAMC1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | S-adenosylmethionine carrier 1, chloroplastic/mitochondrial; S-adenosylmethionine transporter 1; | |
Q9SV15 (WRK11_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Probable WRKY transcription factor 11; WRKY DNA-binding protein 11; | |
P0DI10 (PER1_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxidase 1; ATP11a; Atperox P1; | |
Q67Z07 (PER2_ARATH) | Swiss-Prot | Arabidopsis thaliana (Mouse-ear cress) | Peroxidase 2; ATP12a; Atperox P2; |
Arabidopsis thaliana is a small flowering plant native to Eurasia. A. thaliana is considered a weed; it is found by roadsides and in disturbed lands.
A winter annual with a relatively short life cycle, Arabidopsis is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, A. thaliana has a relatively small genome of approximately 135 megabase pairs. It was the first plant to have its genome sequenced, and is a popular tool for understanding the molecular biology of many plant traits, including flower development and light sensing.
The genome of A. thaliana was sequenced in 2000.
From left to right: i) The number of proteins in the reference proteome of Arabidopsis thaliana, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Arabidopsis thaliana for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Arabidopsis thaliana, please visit UniProtKB.
You can easily download the latest protein sequences for Arabidopsis thaliana proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_01 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
27,448 | 20,598 | 38,175 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Arabidopsis thaliana reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Arabidopsis thaliana proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 24-mer | 32-mer | 35-mer | 36-mer | 39-mer | 40-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
31,573 | 4,870 | 345 | 743 | 29 | 288 | 63 | 40 | 8 | 20 | 3 | 111 | 19 | 4 | 1 | 22 | 2 | 1 | 1 | 1 | 13 | 1 | 2 | 12 | 3 |