| UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
|---|---|---|---|---|
| Q03388 (VPS72_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Vacuolar protein sorting-associated protein 72; SWR complex protein 2; | |
| P40068 (FLO8_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Transcriptional activator FLO8; Protein PDH5; | |
| P40897 (OPT1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Oligopeptide transporter 1; High affinity glutathione transporter 1; | |
| P53243 (YG2A_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Zinc finger protein YGR067C; | |
| P38129 (TAF5_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | SAGA complex/transcription factor TFIID complex subunit TAF5; TAFII-90; TBP-associated factor 5; TBP-associated factor 90 kDa; Transcription initiation factor TFIID subunit 5; | |
| P08468 (PT111_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Protein PET111, mitochondrial; | |
| P53086 (KIP3_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Kinesin-like protein KIP3; | |
| P53036 (SAP4_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | SIT4-associating protein SAP4; | |
| Q12502 (LDB19_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Protein LDB19; Low dye-binding protein 19; | |
| Q12018 (CDC53_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Cell division control protein 53; Cullin-A; E3 ubiquitin ligase complex SCF subunit CDC53; | |
| P53278 (YG3A_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Uncharacterized protein YGR130C; | |
| P25037 (UBP1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Ubiquitin carboxyl-terminal hydrolase 1; Deubiquitinating enzyme 1; Ubiquitin thioesterase 1; Ubiquitin-specific-processing protease 1; | |
| P46949 (FYV8_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Protein FYV8; Function required for yeast viability protein 8; | |
| P37370 (VRP1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Verprolin; | |
| P46951 (YPP1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Cargo-transport protein YPP1; Alpha-synuclein protective protein 1; | |
| P47116 (PTK2_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Serine/threonine-protein kinase PTK2/STK2; | |
| P53733 (RT19_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Small ribosomal subunit protein uS19m; 37S ribosomal protein S19, mitochondrial; | |
| P89114 (SAE3_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Pachytene arrest protein SAE3; Sporulation in the absence of SPO11 protein 3; | |
| P32944 (SWE1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Mitosis inhibitor protein kinase SWE1; Wee1 homolog; | |
| P33775 (PMT1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Dolichyl-phosphate-mannose--protein mannosyltransferase 1; | |
| Q01919 (KIN4_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Serine/threonine-protein kinase KIN4; | |
| P00815 (HIS2_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Histidine biosynthesis trifunctional protein; Phosphoribosyl-AMP cyclohydrolase; 3.5.4.19; Phosphoribosyl-ATP pyrophosphohydrolase; 3.6.1.31; Histidinol dehydrogenase; HDH; 1.1.1.23; | |
| Q12497 (FMP16_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Protein FMP16, mitochondrial; Found in mitochondrial proteome protein 16; | |
| O14464 (RTC6_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Large ribosomal subunit protein bL36m; 54S ribosomal protein RTC6, mitochondrial; Restriction of telomere capping protein 6; Translation associated element 4; | |
| Q3E827 (LSO1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Protein LSO1; Late-annotated small open reading frame 1; | |
| P40089 (LSM5_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | LSM complex subunit LSM5; | |
| P87108 (TIM10_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Mitochondrial import inner membrane translocase subunit TIM10; Mitochondrial intermembrane protein MRS11; | |
| P40094 (COG3_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Conserved oligomeric Golgi complex subunit 3; Component of oligomeric Golgi complex 3; Protein SEC34; | |
| P53121 (FLC3_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Putative flavin carrier protein 3; FAD transporter 3; TRP-like ion channel FLC3; | |
| P07244 (PUR2_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Bifunctional purine biosynthetic protein ADE5,7; Phosphoribosylamine--glycine ligase; 6.3.4.13; Glycinamide ribonucleotide synthetase; GAR synthetase; GARS; Phosphoribosylglycinamide synthetase; Phosphoribosylformylglycinamidine cyclo-ligase; 6.3.3.1; AIR synthase; AIR synthetase; AIRS; Phosphoribosyl-aminoimidazole synthetase; | |
| P38996 (NAB3_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Nuclear polyadenylated RNA-binding protein 3; | |
| Q03788 (YD250_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Putative uncharacterized protein YDR250C; | |
| Q12172 (YRR1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Zinc finger transcription factor YRR1; Pleiotropic drug-resistance protein 2; | |
| P40494 (PRK1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Actin-regulating kinase PRK1; p53-regulating kinase 1; | |
| P39940 (RSP5_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | E3 ubiquitin-protein ligase RSP5; HECT-type E3 ubiquitin transferase RSP5; Reverses SPT-phenotype protein 5; | |
| Q08960 (TYW1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase; tRNA wybutosine-synthesizing protein 1; | |
| P13188 (SYQ_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Glutamine--tRNA ligase; Glutaminyl-tRNA synthetase; | |
| Q04660 (ERB1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Ribosome biogenesis protein ERB1; Eukaryotic ribosome biogenesis protein 1; | |
| Q08693 (TRE2_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Putative zinc metalloprotease TRE2; Transferrin receptor-like protein 2; | |
| P22035 (BAS1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Myb-like DNA-binding protein BAS1; | |
| P48743 (RFX1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | RFX-like DNA-binding protein RFX1; | |
| Q03308 (VPS16_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Vacuolar protein sorting-associated protein 16; Vacuolar morphogenesis protein 9; Vacuolar protein-targeting protein 16; | |
| P32606 (PT127_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Putative mitochondrial translation system component PET127; | |
| P11632 (NHP6A_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Non-histone chromosomal protein 6A; | |
| P0C5P0 (YJ197_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Uncharacterized protein YJL197C-A; | |
| P21576 (VPS1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Vacuolar protein sorting-associated protein 1; | |
| Q3E772 (LSO2_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Protein LSO2; Late-annotated small open reading frame 2; | |
| Q3E744 (YG161_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Uncharacterized protein YGR161W-C; | |
| Q02647 (DYL1_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Dynein light chain 1, cytoplasmic; | |
| Q06479 (YL352_YEAST) | Swiss-Prot | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | F-box protein YLR352W; |
Saccharomyces cerevisiae is a species of yeast. The cells are round to ovoid and 5–10 μm in diameter. It reproduces by a division process known as budding. S. cerevisiae has been instrumental to winemaking, baking, and brewing since ancient times. It is believed to have been originally isolated from the skin of grapes.
S. cerevisiae is one of the most intensively studied eukaryotic model organisms in molecular and cell biology, among others for senescence, meiosis, recombination and DNA repair. Many proteins important in human biology were first discovered by studying their homologs in yeast.
The genome of S. cerevisiae was first sequenced in 1996.
"Saccharomyces cerevisiae", Wikipedia: The Free Encyclopedia
From left to right: i) The number of proteins in the reference proteome of Saccharomyces cerevisiae, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Saccharomyces cerevisiae for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Saccharomyces cerevisiae, please visit UniProtKB.
You can easily download the latest protein sequences for Saccharomyces cerevisiae proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_04 that was used for the most up to date SWISS-MODEL Repository.
| Proteins in proteome | Sequences modelled | Models |
| 6,065 | 4,763 | 8,748 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Saccharomyces cerevisiae reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Saccharomyces cerevisiae proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
| Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 24-mer | 32-mer | 40-mer | 60-mer | 62-mer |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7,402 | 927 | 48 | 192 | 11 | 101 | 5 | 26 | 1 | 8 | 2 | 11 | 3 | 4 | 1 | 2 | 2 | 2 |
