UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
P34276 (YKJ2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | GILT-like protein C02D5.2; | |
Q10924 (FKH6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Forkhead transcription factor fkh-6; | |
P52906 (UNC30_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Homeobox protein unc-30; Uncoordinated protein 30; | |
P54127 (SRG5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class gamma-5; | |
Q9N5N8 (SURF1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | SURF1-like protein; | |
Q09455 (COL39_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cuticle collagen 39; | |
P34626 (YOJ3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein ZK353.3; | |
Q02333 (YOL6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein ZK370.6; | |
Q688C0 (RT24_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Small ribosomal subunit protein uS3m; 28S ribosomal protein S24, mitochondrial; | |
P34393 (CL160_CAEEL) | Swiss-Prot | Caenorhabditis elegans | C-type lectin domain-containing protein 160; | |
A5HWA8 (EFL2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Transcription factor efl-2; E2F-like family member 2; | |
O01513 (IMP3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | U3 small nucleolar ribonucleoprotein protein imp3; 40S ribosomal protein S4-like; | |
Q9U239 (ZN593_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc finger protein 593 homolog; | |
Q21181 (NAS19_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc metalloproteinase nas-19; Nematode astacin 19; | |
Q22306 (YW12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | UPF0046 protein T07D4.2; | |
Q10454 (KARG1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable arginine kinase F46H5.3; | |
Q9NA56 (TBX39_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative T-box protein 39; | |
Q17389 (CUL1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cullin-1; Abnormal cell lineage protein 19; | |
Q09371 (YS42_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein ZK177.2; | |
Q5FC64 (ZDHCS_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Palmitoyltransferase spe-10; Defective spermatogenesis protein 10; | |
P91529 (RPC6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable DNA-directed RNA polymerase III subunit RPC6; DNA-directed RNA polymerase III subunit F; | |
P91148 (NDX7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative nudix hydrolase 7; | |
O16974 (SRG53_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class gamma-53; | |
Q9U3C8 (DCN1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Defective in cullin neddylation protein 1; | |
Q23588 (UTPP_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uridine and thymidine phosphorylase; Pyrimidine-nucleoside phosphorylase; | |
G5EFY7 (PQM1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc finger transcription factor pqm-1; CePqM132; Paraquat responsive protein; | |
Q95Q18 (LACB2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Beta-lactamase-like protein 2 homolog; | |
Q21917 (GPA7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Guanine nucleotide-binding protein alpha-7 subunit; | |
Q9NA75 (T38B1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Trimeric intracellular cation channel type 1B.1; TRIC-B1; | |
G5EGN8 (NHR27_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear hormone receptor family member nhr-27; | |
O45365 (NH176_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear hormone receptor family nhr-176; | |
P18834 (COL14_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cuticle collagen 14; | |
Q95ZY4 (SRB5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class beta-5; | |
Q09638 (NPR15_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Neuropeptide receptor 15; | |
P46500 (SDZ15_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Skn-1 dependent zygotic transcript 15 protein; | |
Q20027 (C25HL_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cholesterol 25-hydroxylase-like protein; | |
Q21187 (FKH9_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Forkhead transcription factor fkh-9; | |
Q21307 (MEK1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Dual specificity mitogen-activated protein kinase kinase mek-1; | |
P17656 (COL2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cuticle collagen 2; | |
Q8WTM6 (ARPC2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable actin-related protein 2/3 complex subunit 2; Arp2/3 complex 34 kDa subunit; | |
Q9XXS1 (LYS3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Lysozyme-like protein 3; | |
G5EFQ5 (RUNX1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Runt-related transcription factor rnt-1; | |
Q9N2W5 (UBXN2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | UBX domain-containing protein 2; | |
Q18090 (TOM40_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Mitochondrial import receptor subunit TOM40 homolog; Translocase of outer membrane 40 kDa subunit homolog; | |
P08124 (COL1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cuticle collagen 1; Protein dumpy-15; Protein squat-3; | |
Q03568 (YLD3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein C38C10.3; | |
Q10045 (UNC50_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein unc-50; Uncoordinated protein 50; | |
Q20053 (AT5F1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ATP synthase F(0) complex subunit B1, mitochondrial; ATP synthase peripheral stalk-membrane subunit B1; ATP synthase proton-transporting mitochondrial F(0) complex subunit B1; ATP synthase subunit B1; | |
Q5WRN1 (TSP21_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Tetraspanin-21; | |
P34356 (RHOM2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Inactive rhomboid-related protein 2; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,824 | 13,191 | 24,151 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 20-mer | 24-mer | 25-mer | 32-mer | 34-mer | 40-mer | 41-mer | 44-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21,182 | 2,009 | 162 | 397 | 123 | 104 | 7 | 42 | 9 | 14 | 1 | 39 | 5 | 7 | 1 | 1 | 11 | 1 | 14 | 1 | 8 | 3 | 2 | 1 | 1 | 5 | 1 |