UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
G5ED66 (PAX3H_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Paired box protein 3 homolog; | |
P41991 (PES10_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Patterned expression site protein 10; | |
O62203 (PHM2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Pharyngeal muscle protein 2; | |
F5GUE5 (DAF14_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Smad-related protein daf-14; Abnormal dauer formation protein 14; | |
G5EEW6 (SIG7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Peptidyl-prolyl cis-trans isomerase sig-7; Cyclophilin-like protein sig-7; Silencer in germline 7; | |
Q9N2K7 (TBX30_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative T-box protein 30/42; | |
Q22495 (TSP12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Tetraspanin-12; | |
Q9N3E2 (MAB31_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Male abnormal protein mab-31; | |
P20163 (BIBH_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Endoplasmic reticulum chaperone BiP homolog; Heat shock 70 kDa protein D; | |
O62267 (SRE30_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class epsilon-30; | |
P46564 (SRV1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class V-1; Protein srg-12; | |
P55113 (NAS7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc metalloproteinase nas-7; Nematode astacin 7; | |
Q04833 (LRP_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Low-density lipoprotein receptor-related protein; | |
P34515 (YMX7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein K06H7.7; | |
O17204 (OSTA1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Organic solute transporter alpha-like protein 1; Solute carrier family 51 subunit alpha homolog C; | |
Q966C6 (RL7A_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Large ribosomal subunit protein eL8; 60S ribosomal protein L7a; | |
Q09336 (FB224_CAEEL) | Swiss-Prot | Caenorhabditis elegans | F-box A protein 224; | |
O02305 (NH217_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear hormone receptor family member nhr-217; | |
O17917 (RN113_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable E3 ubiquitin-protein ligase rnf113; RING finger protein 113 homolog; | |
Q9XUM6 (BAT34_CAEEL) | Swiss-Prot | Caenorhabditis elegans | BTB and MATH domain-containing protein 34; | |
Q18484 (TMX2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Thioredoxin-related transmembrane protein 2 homolog; Thioredoxin domain-containing protein 14 homolog; | |
Q18006 (SOX_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative sarcosine oxidase; | |
Q9XTD6 (NAS12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc metalloproteinase nas-12; Nematode astacin 12; | |
P54073 (YUY1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Brix domain-containing protein F44G4.1; | |
Q9XXU9 (VATC_CAEEL) | Swiss-Prot | Caenorhabditis elegans | V-type proton ATPase subunit C; Vacuolar proton pump subunit C; | |
Q17335 (ADHX_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Alcohol dehydrogenase homolog 5; Glutathione-dependent formaldehyde dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase; | |
Q09952 (YSR4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein F59B10.4; | |
Q20701 (GPA5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Guanine nucleotide-binding protein alpha-5 subunit; | |
G5EGC9 (PES1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Forkhead box protein pes-1; Pattern expression site 1; | |
Q9XWJ1 (SMG9_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nonsense-mediated mRNA decay factor SMG9; Suppressor with morphogenetic effect on genitalia protein 9; | |
G5EF15 (POS1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | RNA-binding protein pos-1; Posterior segregation protein pos-1; Zinc-finger protein pos-1; | |
Q93571 (UBC25_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Ubiquitin-conjugating enzyme E2 25; E2 ubiquitin-conjugating enzyme 25; | |
Q10664 (MEK2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Dual specificity mitogen-activated protein kinase kinase mek-2; | |
Q09341 (YR24_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein W02B3.4; | |
O16925 (STDH4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative steroid dehydrogenase 4; | |
Q10130 (DHS5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized oxidoreductase dhs-5; Short-chain dehydrogenase 5; | |
P34350 (YK84_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein C30A5.4; | |
Q9U2R0 (BIN3D_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable RNA methyltransferase Y17G7B.18; | |
Q9XWV0 (TMM33_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Transmembrane protein 33 homolog; | |
Q22472 (RIC3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Resistance to inhibitors of cholinesterase protein 3; | |
O62461 (SELD_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable selenide, water dikinase; Selenium donor protein; Selenophosphate synthase 1; | |
Q18054 (HLH25_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Helix-loop-helix protein 25; | |
Q19872 (ATZ1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein atz-1; Abnormal transition zone 1; | |
Q10007 (HLH6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Helix-loop-helix protein 6; | |
P34714 (SPRC_CAEEL) | Swiss-Prot | Caenorhabditis elegans | SPARC; Basement-membrane protein 40; Osteonectin; Secreted protein acidic and rich in cysteine; | |
G5EDW7 (LIN8_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein lin-8; Abnormal cell lineage protein 8; | |
P41844 (YO94_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized F-box protein T20B12.4; | |
G5EEM6 (TAB1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | TGF-beta-activated kinase 1 and MAP3K7-binding protein 1; TAB1-like protein 1; TAK1 kinase/MOM-4 binding Protein; | |
Q23261 (MTNB_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable methylthioribulose-1-phosphate dehydratase; | |
Q9U2H9 (EF1B2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable elongation factor 1-beta/1-delta 2; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_02 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,824 | 13,191 | 24,151 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 20-mer | 24-mer | 25-mer | 32-mer | 34-mer | 40-mer | 41-mer | 44-mer | 48-mer | 51-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21,182 | 2,009 | 162 | 397 | 123 | 104 | 7 | 42 | 9 | 14 | 1 | 39 | 5 | 7 | 1 | 1 | 11 | 1 | 14 | 1 | 8 | 3 | 2 | 1 | 1 | 5 | 1 |