UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q94131 (PIE1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Pharynx and intestine in excess protein 1; | |
O61742 (PSMD4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 26S proteasome non-ATPase regulatory subunit 4; 26S proteasome regulatory subunit rpn-10; | |
Q9U2C9 (TBX37_CAEEL) | Swiss-Prot | Caenorhabditis elegans | T-box protein 37; | |
Q20405 (SRA10_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class alpha-10; | |
O17847 (SRA25_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class alpha-25; | |
Q09217 (YP68_CAEEL) | Swiss-Prot | Caenorhabditis elegans | LUC7-related splicing factor homolog; | |
Q23120 (RSP2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable splicing factor, arginine/serine-rich 2; CeSRp40; RNA-binding protein srp-4; | |
Q9XXD4 (NHP2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative H/ACA ribonucleoprotein complex subunit 2-like protein; | |
P34383 (FAR2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Fatty-acid and retinol-binding protein 2; | |
Q19013 (GLS2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative glutaminase 2; L-glutamine amidohydrolase; | |
Q9U7D5 (ACM3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Muscarinic acetylcholine receptor gar-3; G-protein-linked acetylcholine receptor 3; | |
G5EDE9 (NFKI1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ANK repeat-containing protein nipk-1; | |
Q18299 (NHR43_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear hormone receptor family member nhr-43; | |
Q20191 (NAS13_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc metalloproteinase nas-13; Nematode astacin 13; | |
Q17528 (BEST1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bestrophin homolog 1; | |
P34273 (IYD1H_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Iodotyrosine dehalogenase 1 homolog; | |
Q09343 (YR27_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein W02B3.7; | |
P34444 (YL86_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein F54C8.6; | |
O02485 (YDJ1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein ZK1073.1; | |
Q09376 (TBX35_CAEEL) | Swiss-Prot | Caenorhabditis elegans | T-box transcription factor tbx-35; | |
Q20848 (P5CR4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative pyrroline-5-carboxylate reductase 4; | |
Q19157 (PIN2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | LIM domain-containing protein pin-2; | |
Q9U6P6 (RNH2A_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Ribonuclease H2 subunit A; RNase H(35); Ribonuclease HI large subunit; Ribonuclease HI subunit A; | |
Q09581 (LEC3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 32 kDa beta-galactoside-binding lectin lec-3; 32 kDa GBP; | |
Q93591 (YUBO_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein F26A3.7; | |
Q09246 (YP98_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein C28H8.8; | |
Q9N3F0 (RPF2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Ribosome production factor 2 homolog; Brix domain-containing protein 1 homolog; Ribosome biogenesis protein RPF2 homolog; | |
Q9U1W2 (MED8_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Mediator of RNA polymerase II transcription subunit 8; Mediator complex subunit 8; | |
P45964 (YNZ4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein T09A5.4; | |
Q9BLC4 (SDZ12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Zinc finger protein sdz-12; Skn-1-dependent zygotic transcript 12 protein; | |
F5GUE5 (DAF14_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Smad-related protein daf-14; Abnormal dauer formation protein 14; | |
Q09248 (DCTN2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable dynactin subunit 2; | |
Q23622 (TBX36_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative T-box protein 36; | |
Q5FC79 (SFXN5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Sideroflexin-5; | |
Q09203 (SRA1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class alpha-1; | |
Q09370 (YS41_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein ZK177.1; | |
Q09212 (SRA9_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serpentine receptor class alpha-9; | |
Q8WTM6 (ARPC2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable actin-related protein 2/3 complex subunit 2; Arp2/3 complex 34 kDa subunit; | |
G5EFQ5 (RUNX1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Runt-related transcription factor rnt-1; | |
Q03568 (YLD3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein C38C10.3; | |
Q9XXS1 (LYS3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Lysozyme-like protein 3; | |
Q9N2W5 (UBXN2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | UBX domain-containing protein 2; | |
P45969 (SDS22_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein phosphatase 1 regulatory subunit SDS22 homolog; | |
Q10045 (UNC50_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein unc-50; Uncoordinated protein 50; | |
Q18090 (TOM40_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Mitochondrial import receptor subunit TOM40 homolog; Translocase of outer membrane 40 kDa subunit homolog; | |
P08124 (COL1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cuticle collagen 1; Protein dumpy-15; Protein squat-3; | |
P17656 (COL2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Cuticle collagen 2; | |
Q5WRN1 (TSP21_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Tetraspanin-21; | |
Q20053 (AT5F1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ATP synthase F(0) complex subunit B1, mitochondrial; ATP synthase peripheral stalk-membrane subunit B1; ATP synthase proton-transporting mitochondrial F(0) complex subunit B1; ATP synthase subunit B1; | |
O62259 (KLF2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Kruppel-like factor 2; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_03 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,824 | 13,226 | 23,645 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 20-mer | 24-mer | 25-mer | 32-mer | 34-mer | 40-mer | 41-mer | 44-mer | 48-mer | 51-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20,751 | 1,962 | 158 | 388 | 118 | 103 | 7 | 39 | 7 | 14 | 1 | 37 | 7 | 7 | 1 | 1 | 11 | 1 | 10 | 1 | 8 | 3 | 2 | 1 | 1 | 1 | 4 | 1 |