UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
P34501 (SUSD_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Defecation cycle abnormal dec-7; Sushi domain-containing 2 homolog; | |
Q9U7E0 (ATRX_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Transcriptional regulator ATRX homolog; ATP-dependent helicase xnp-1; X-linked nuclear protein 1; | |
Q19272 (MSH5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | MutS protein homolog 5; | |
G5EGJ9 (DEP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Receptor-type tyrosine-protein phosphatase dep-1; Density-enhanced phosphatase homolog 1; | |
O76411 (SCD2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ALK tyrosine kinase receptor homolog scd-2; Suppressor of constitutive dauer formation protein 2; | |
Q09614 (PTC1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein patched homolog 1; | |
Q27395 (LI15B_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein lin-15B; Abnormal cell lineage protein 15B; | |
Q21874 (YF1M_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein R09E10.5; | |
P14585 (LIN12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein lin-12; Abnormal cell lineage protein 12; Notch-like protein lin-12; lin-12/Notch intracellular domain; | |
O44997 (DAPK_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Death-associated protein kinase dapk-1; | |
O61213 (DUOX1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Dual oxidase 1; Blistered cuticle protein 3; NADPH thyroid oxidase 1; | |
Q9N5D3 (SOS_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Son of sevenless homolog; Guanine nucleotide exchange factor for RAS; | |
P34667 (YO11_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein ZK686.1; | |
Q18245 (YC27B_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Ig-like and fibronectin type-III domain-containing protein C27B7.7; | |
P34703 (SPT6H_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Suppressor of Ty 6 homolog; Abnormal embryogenesis protein 5; | |
Q23670 (TOP2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | DNA topoisomerase 2 top-2; DNA topoisomerase II; | |
Q09449 (YQ12_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized ATP-dependent helicase C05C10.2; | |
Q03570 (MED14_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Mediator of RNA polymerase II transcription subunit 14; Mediator complex subunit 14; Mediator complex subunit rgr-1; | |
O17582 (SPR4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Suppressor of presenilin protein 4; | |
H2L0G5 (PTC3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein patched homolog 3; | |
Q23658 (CAPS_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Calcium-dependent secretion activator; Uncoordinated protein 31; | |
P24348 (LET23_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Receptor tyrosine-protein kinase let-23; Lethal protein 23; | |
Q5DX34 (RPGRH_CAEEL) | Swiss-Prot | Caenorhabditis elegans | X-linked retinitis pigmentosa GTPase regulator homolog; Gut granule loss protein 4; | |
P34300 (FIP3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Fungus-induced protein 3; | |
Q19408 (FIR15_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Fungus-induced-related protein 15; | |
Q65XX2 (LTN1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | E3 ubiquitin-protein ligase listerin; RING-type E3 ubiquitin transferase listerin; | |
G5EBH0 (PLCB_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta egl-8; Egg-laying defective protein 8; Phosphoinositide phospholipase C-beta egl-8; Phospholipase C-beta egl-8; | |
G5ECZ4 (DYF2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | WD repeat-containing protein dyf-2; Abnormal dye filling protein 2; | |
H2KZM6 (PTPR_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Receptor-type tyrosine-protein phosphatase; | |
Q9U2M1 (CND1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Condensin complex subunit 1; Non-SMC condensin I complex subunit dpy-28; | |
Q18221 (SET1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Histone-lysine N-methyltransferase set-2; SET domain-containing protein 2; | |
Q21029 (NSY1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Mitogen-activated protein kinase kinase kinase nsy-1; Apoptosis signal-regulating kinase 1; Neuronal symmetry kinase 1; | |
Q9N4C2 (CPSF1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable cleavage and polyadenylation specificity factor subunit 1; Cleavage and polyadenylation specificity factor 160 kDa subunit; | |
P34641 (CED11_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein ced-11; Cell death protein 11; | |
Q22366 (RIM_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Rab-3-interacting molecule unc-10; Uncoordinated protein 10; | |
G5ECH5 (PP4R1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serine/threonine-protein phosphatase 4 regulatory subunit 1; | |
Q9N4G4 (MED1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Mediator of RNA polymerase II transcription subunit 1.1; Mediator complex subunit 1.1; Suppressor of pal-1 protein 3; | |
G5EDB9 (RPGF_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Rap guanine nucleotide exchange factor; PDZ-domain-containing exchange factor; | |
P34709 (TRA2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Sex-determining transformer protein 2; Ce-Tra-2; | |
G5EE72 (MRP5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Multidrug resistance-associated protein 5; ATP-binding cassette sub-family C member mrp-5; | |
Q23541 (KDM5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Lysine-specific demethylase rbr-2; Histone demethylase rbr-2; Jumonji/ARID domain-containing protein rbr-2; [histone H3]-trimethyl-L-lysine(4) demethylase rbr-2; | |
G5EF53 (SWSN4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | SWI/SNF chromatin remodeling complex core catalytic subunit swsn-4; ATP-dependent helicase swsn-4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4; SWI2/SNF2-like protein; | |
G5EF96 (UNC40_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Netrin receptor unc-40; Uncoordinated protein 40; | |
Q09417 (RIC1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Guanine nucleotide exchange factor subunit R06F6.8; Protein RIC1 homolog; | |
Q17353 (PAR3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Partitioning defective protein 3; Abnormal embryonic partitioning of cytoplasm protein 3; | |
Q23590 (BAZ2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Bromodomain adjacent to zinc finger domain protein 2; | |
Q19127 (NPC1A_CAEEL) | Swiss-Prot | Caenorhabditis elegans | NPC intracellular cholesterol transporter 1 homolog 1; Niemann-Pick C1 protein homolog 1; | |
Q17602 (NU214_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Nuclear pore complex protein 14; Nuclear pore complex protein Nup214; Nucleoporin npp-14; | |
Q20762 (YAO6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Uncharacterized protein F54D1.6; | |
P34504 (CHTB1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Chitin binding domain (ChtBD2) containing chtb-1; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_03 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,824 | 13,226 | 23,645 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 11-mer | 12-mer | 14-mer | 16-mer | 18-mer | 20-mer | 24-mer | 25-mer | 32-mer | 34-mer | 40-mer | 41-mer | 44-mer | 48-mer | 51-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
20,751 | 1,962 | 158 | 388 | 118 | 103 | 7 | 39 | 7 | 14 | 1 | 37 | 7 | 7 | 1 | 1 | 11 | 1 | 10 | 1 | 8 | 3 | 2 | 1 | 1 | 1 | 4 | 1 |