Filter results by: Taxon Proteome
1 - 50 of 27444 UniProtKB matches
(34299 models, 682 structures.)
UniProtKB AC
(Name)
UniProtKB Section
 
Homology Model
 
Experimental Structure
OrganismDescription
P34501
(SUSD_CAEEL)
Swiss-Prot
Caenorhabditis elegansDefecation cycle abnormal dec-7;
Sushi domain-containing 2 homolog;
Q9U7E0
(ATRX_CAEEL)
Swiss-ProtCaenorhabditis elegansTranscriptional regulator ATRX homolog;
ATP-dependent helicase xnp-1;
X-linked nuclear protein 1;
Q19272
(MSH5_CAEEL)
Swiss-Prot
Caenorhabditis elegansMutS protein homolog 5;
G5EGJ9
(DEP1_CAEEL)
Swiss-Prot
Caenorhabditis elegansReceptor-type tyrosine-protein phosphatase dep-1;
Density-enhanced phosphatase homolog 1;
O76411
(SCD2_CAEEL)
Swiss-Prot
Caenorhabditis elegansALK tyrosine kinase receptor homolog scd-2;
Suppressor of constitutive dauer formation protein 2;
Q09614
(PTC1_CAEEL)
Swiss-Prot
Caenorhabditis elegansProtein patched homolog 1;
Q27395
(LI15B_CAEEL)
Swiss-Prot
Caenorhabditis elegansProtein lin-15B;
Abnormal cell lineage protein 15B;
Q21874
(YF1M_CAEEL)
Swiss-ProtCaenorhabditis elegansUncharacterized protein R09E10.5;
P14585
(LIN12_CAEEL)
Swiss-Prot
Caenorhabditis elegansProtein lin-12;
Abnormal cell lineage protein 12;
Notch-like protein lin-12;
lin-12/Notch intracellular domain;
O44997
(DAPK_CAEEL)
Swiss-Prot
Caenorhabditis elegansDeath-associated protein kinase dapk-1;
O61213
(DUOX1_CAEEL)
Swiss-Prot
Caenorhabditis elegansDual oxidase 1;
Blistered cuticle protein 3;
NADPH thyroid oxidase 1;
Q9N5D3
(SOS_CAEEL)
Swiss-Prot
Caenorhabditis elegansSon of sevenless homolog;
Guanine nucleotide exchange factor for RAS;
P34667
(YO11_CAEEL)
Swiss-ProtCaenorhabditis elegansUncharacterized protein ZK686.1;
Q18245
(YC27B_CAEEL)
Swiss-Prot
Caenorhabditis elegansIg-like and fibronectin type-III domain-containing protein C27B7.7;
P34703
(SPT6H_CAEEL)
Swiss-Prot
Caenorhabditis elegansSuppressor of Ty 6 homolog;
Abnormal embryogenesis protein 5;
Q23670
(TOP2_CAEEL)
Swiss-Prot
Caenorhabditis elegansDNA topoisomerase 2 top-2;
DNA topoisomerase II;
Q09449
(YQ12_CAEEL)
Swiss-Prot
Caenorhabditis elegansUncharacterized ATP-dependent helicase C05C10.2;
Q03570
(MED14_CAEEL)
Swiss-Prot
Caenorhabditis elegansMediator of RNA polymerase II transcription subunit 14;
Mediator complex subunit 14;
Mediator complex subunit rgr-1;
O17582
(SPR4_CAEEL)
Swiss-ProtCaenorhabditis elegansSuppressor of presenilin protein 4;
H2L0G5
(PTC3_CAEEL)
Swiss-Prot
Caenorhabditis elegansProtein patched homolog 3;
Q23658
(CAPS_CAEEL)
Swiss-Prot
Caenorhabditis elegansCalcium-dependent secretion activator;
Uncoordinated protein 31;
P24348
(LET23_CAEEL)
Swiss-Prot
Caenorhabditis elegansReceptor tyrosine-protein kinase let-23;
Lethal protein 23;
Q5DX34
(RPGRH_CAEEL)
Swiss-Prot
Caenorhabditis elegansX-linked retinitis pigmentosa GTPase regulator homolog;
Gut granule loss protein 4;
P34300
(FIP3_CAEEL)
Swiss-ProtCaenorhabditis elegansFungus-induced protein 3;
Q19408
(FIR15_CAEEL)
Swiss-ProtCaenorhabditis elegansFungus-induced-related protein 15;
Q65XX2
(LTN1_CAEEL)
Swiss-Prot
Caenorhabditis elegansE3 ubiquitin-protein ligase listerin;
RING-type E3 ubiquitin transferase listerin;
G5EBH0
(PLCB_CAEEL)
Swiss-Prot
Caenorhabditis elegans1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta egl-8;
Egg-laying defective protein 8;
Phosphoinositide phospholipase C-beta egl-8;
Phospholipase C-beta egl-8;
G5ECZ4
(DYF2_CAEEL)
Swiss-Prot
Caenorhabditis elegansWD repeat-containing protein dyf-2;
Abnormal dye filling protein 2;
H2KZM6
(PTPR_CAEEL)
Swiss-Prot
Caenorhabditis elegansReceptor-type tyrosine-protein phosphatase;
Q9U2M1
(CND1_CAEEL)
Swiss-Prot
Caenorhabditis elegansCondensin complex subunit 1;
Non-SMC condensin I complex subunit dpy-28;
Q18221
(SET1_CAEEL)
Swiss-Prot
Caenorhabditis elegansHistone-lysine N-methyltransferase set-2;
SET domain-containing protein 2;
Q21029
(NSY1_CAEEL)
Swiss-Prot
Caenorhabditis elegansMitogen-activated protein kinase kinase kinase nsy-1;
Apoptosis signal-regulating kinase 1;
Neuronal symmetry kinase 1;
Q9N4C2
(CPSF1_CAEEL)
Swiss-Prot
Caenorhabditis elegansProbable cleavage and polyadenylation specificity factor subunit 1;
Cleavage and polyadenylation specificity factor 160 kDa subunit;
P34641
(CED11_CAEEL)
Swiss-Prot
Caenorhabditis elegansProtein ced-11;
Cell death protein 11;
Q22366
(RIM_CAEEL)
Swiss-Prot
Caenorhabditis elegansRab-3-interacting molecule unc-10;
Uncoordinated protein 10;
G5ECH5
(PP4R1_CAEEL)
Swiss-ProtCaenorhabditis elegansSerine/threonine-protein phosphatase 4 regulatory subunit 1;
Q9N4G4
(MED1_CAEEL)
Swiss-ProtCaenorhabditis elegansMediator of RNA polymerase II transcription subunit 1.1;
Mediator complex subunit 1.1;
Suppressor of pal-1 protein 3;
G5EDB9
(RPGF_CAEEL)
Swiss-Prot
Caenorhabditis elegansRap guanine nucleotide exchange factor;
PDZ-domain-containing exchange factor;
P34709
(TRA2_CAEEL)
Swiss-ProtCaenorhabditis elegansSex-determining transformer protein 2;
Ce-Tra-2;
G5EE72
(MRP5_CAEEL)
Swiss-Prot
Caenorhabditis elegansMultidrug resistance-associated protein 5;
ATP-binding cassette sub-family C member mrp-5;
Q23541
(KDM5_CAEEL)
Swiss-Prot
Caenorhabditis elegansLysine-specific demethylase rbr-2;
Histone demethylase rbr-2;
Jumonji/ARID domain-containing protein rbr-2;
[histone H3]-trimethyl-L-lysine(4) demethylase rbr-2;
G5EF53
(SWSN4_CAEEL)
Swiss-Prot
Caenorhabditis elegansSWI/SNF chromatin remodeling complex core catalytic subunit swsn-4;
ATP-dependent helicase swsn-4;
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4;
SWI2/SNF2-like protein;
G5EF96
(UNC40_CAEEL)
Swiss-Prot
Caenorhabditis elegansNetrin receptor unc-40;
Uncoordinated protein 40;
Q09417
(RIC1_CAEEL)
Swiss-ProtCaenorhabditis elegansGuanine nucleotide exchange factor subunit R06F6.8;
Protein RIC1 homolog;
Q17353
(PAR3_CAEEL)
Swiss-Prot
Caenorhabditis elegansPartitioning defective protein 3;
Abnormal embryonic partitioning of cytoplasm protein 3;
Q23590
(BAZ2_CAEEL)
Swiss-Prot
Caenorhabditis elegansBromodomain adjacent to zinc finger domain protein 2;
Q19127
(NPC1A_CAEEL)
Swiss-Prot
Caenorhabditis elegansNPC intracellular cholesterol transporter 1 homolog 1;
Niemann-Pick C1 protein homolog 1;
Q17602
(NU214_CAEEL)
Swiss-Prot
Caenorhabditis elegansNuclear pore complex protein 14;
Nuclear pore complex protein Nup214;
Nucleoporin npp-14;
Q20762
(YAO6_CAEEL)
Swiss-Prot
Caenorhabditis elegansUncharacterized protein F54D1.6;
P34504
(CHTB1_CAEEL)
Swiss-ProtCaenorhabditis elegansChitin binding domain (ChtBD2) containing chtb-1;
1 - 50 of 27444
Caenorhabditis elegans

Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".

C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei

C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.

"Caenorhabditis elegans", Wikipedia: The Free Encyclopedia

Protein models in Repository

From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.

For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.

You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2025_03 that was used for the most up to date SWISS-MODEL Repository.

Proteins in proteomeSequences modelledModels
19,82413,22623,645

Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.

Structural Coverage

The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.

Residue Coverage

This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.

Oligomeric State

Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.

Single Chain2-mer3-mer4-mer5-mer6-mer7-mer8-mer9-mer10-mer11-mer12-mer14-mer16-mer18-mer20-mer24-mer25-mer32-mer34-mer40-mer41-mer44-mer48-mer51-mer55-mer60-mer62-mer
20,7511,962158388118103739714137771111110183211141
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