UniProtKB AC (Name) | UniProtKB Section | Organism | Description | |
---|---|---|---|---|
Q20655 (14332_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 14-3-3-like protein 2; | |
O18178 (2A51_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Serine/threonine-protein phosphatase 2A regulatory subunit pptr-1; Serine/threonine-protein phosphatase 2A 56kDa regulatory subunit pptr-1; Serine/threonine-protein phosphatase 2A regulatory subunit B' pptr-1; | |
Q09543 (2AAA_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable serine/threonine-protein phosphatase PP2A regulatory subunit; Protein phosphatase PP2A regulatory subunit A; | |
Q19341 (3HAO_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 3-hydroxyanthranilate 3,4-dioxygenase; 3-hydroxyanthranilate oxygenase; 3-hydroxyanthranilic acid dioxygenase; | |
Q9XTI0 (3HIDH_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial; | |
Q09315 (5NT3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative cytosolic 5'-nucleotidase 3; Putative pyrimidine 5'-nucleotidase; | |
Q17761 (6PGD_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 6-phosphogluconate dehydrogenase, decarboxylating; | |
O18229 (6PGL_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative 6-phosphogluconolactonase; | |
Q19124 (A16L1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Autophagic-related protein 16.1; | |
Q09406 (A16L2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Autophagic-related protein 16.2; | |
Q5WRS0 (AAIM1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein aaim-1; Antibacterial and aids invasion by microsporidia 1 protein; | |
P45894 (AAPK1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 5'-AMP-activated protein kinase catalytic subunit alpha-1; | |
Q09305 (AAR2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein AAR2 homolog; AAR2 splicing factor homolog; | |
Q22397 (AAT6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Amino acid transporter protein 6; | |
Q22067 (AATC_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Aspartate aminotransferase, cytoplasmic; Glutamate oxaloacetate transaminase 1.2; Transaminase A; | |
Q18610 (ABDH3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Protein abhd-3.2; | |
P91143 (ABH51_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Abhydrolase domain-containing protein abhd-5.1; | |
H2KZ86 (ABH52_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Abhydrolase domain-containing protein abhd-5.2; | |
Q22347 (ACADM_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; | |
O45145 (ACASE_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Alkaline ceramidase; Alkaline N-acylsphingosine amidohydrolase; Alkaline acylsphingosine deacylase; | |
Q21005 (ACC1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine-gated chloride channel subunit acc-1; | |
Q18812 (ACC2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine-gated chloride channel subunit acc-2; | |
G5EDN0 (ACC3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine-gated chloride channel subunit acc-3; | |
Q9U358 (ACC4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine-gated ion channel acc-4; | |
P48180 (ACH1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit alpha-type acr-16; | |
G5EG88 (ACH23_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Betaine receptor acr-23; Acetylcholine receptor subunit alpha-type acr-23; | |
P48181 (ACH2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit beta-type unc-29; Uncoordinated protein 29; | |
P54244 (ACH3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit alpha-type deg-3; | |
O76554 (ACH4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit alpha-type des-2; | |
Q23022 (ACH5_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit alpha-type unc-38; Uncoordinated protein 38; | |
Q9N587 (ACH6_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit alpha-type unc-63; Levamisole-resistant protein 7; Uncoordinated protein 63; | |
Q27218 (ACH7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit beta-type lev-1; Levamisole-resistant protein 1; | |
Q9U298 (ACH8_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Neuronal acetylcholine receptor subunit eat-2; Abnormal pharyngeal pumping eat-2; | |
Q9XX11 (ACKMT_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ATP synthase subunit C lysine N-methyltransferase; | |
Q8T8B9 (ACMSD_CAEEL) | Swiss-Prot | Caenorhabditis elegans | 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Picolinate carboxylase; | |
Q23534 (ACP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Putative acid phosphatase 1; | |
P48182 (ACR2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit beta-type acr-2; | |
Q93149 (ACR3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit beta-type acr-3; | |
P45963 (ACR7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acetylcholine receptor subunit alpha-type acr-7; | |
Q17577 (ACS7_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Acyl-CoA synthetase 7; | |
P0DM41 (ACT1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Actin-1; | |
P10984 (ACT2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Actin-2; | |
P0DM42 (ACT3_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Actin-3; | |
P10986 (ACT4_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Actin-4; | |
Q18008 (ACTL1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | ACT1-like protein; | |
Q8IG39 (ADAL_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Adenosine deaminase-like protein; | |
G5EDW1 (ADBP1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Adr-2-binding protein 1; | |
Q07750 (ADF1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Actin-depolymerizing factor 1, isoforms a/b; Uncoordinated protein 60; | |
Q07749 (ADF2_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Actin-depolymerizing factor 2, isoform c; Uncoordinated protein 60; | |
Q17334 (ADH1_CAEEL) | Swiss-Prot | Caenorhabditis elegans | Alcohol dehydrogenase 1; Sorbitol dehydrogenase family protein 1; |
Caenorhabditis elegans is a free-living, transparent nematode, about 1 mm in length, that lives in temperate soil environments. The name means "elegant new rod".
C. elegans is a model organism for nervous system development as well as senescence. Of interest to researchers is the phenomenon of eutely: each adult hermaphrodite has exactly 959 and each adult male exactly 1031 somatic cell nuclei
C. elegans was the first multicellular organism to have its whole genome sequenced in 1998.
From left to right: i) The number of proteins in the reference proteome of Caenorhabditis elegans, ii) the number of unique protein sequences for which at least one model is available, iii) the total number of models and iv) a coverage bar plot is shown.
The bar plot shows the coverage for every protein in the reference proteome of Caenorhabditis elegans for which there is at least one model. Different colours (dark green to red boxes) represent the coverage of the targets. Targets with high coverage are represented in dark green (more than 80% of the target's length is covered by models), whereas low coverage is shown in red. The size of each box is proportional to the number of target sequences with a given coverage.
For information on the latest proteome for Caenorhabditis elegans, please visit UniProtKB.
You can easily download the latest protein sequences for Caenorhabditis elegans proteome here. Please note this download is for the current UniProtKB release, which may be different to release 2023_01 that was used for the most up to date SWISS-MODEL Repository.
Proteins in proteome | Sequences modelled | Models |
19,826 | 12,307 | 22,205 |
Detailed coverage numbers are obtained by hovering the mouse over one of the boxes.
The plot shows the evolution over years (x-axis) of the fraction of Caenorhabditis elegans reference proteome residues (y-axis) for which structural information is available. Different colors (light blue to dark blue) in the plot represent the quality of the sequence alignment between the reference proteome sequences (targets) and the sequences of the proteins in the structure database (templates). Alignments with low sequence identity are displayed in light blue, whereas alignments with high sequence identity are depicted in dark blue. The SWISS-MODEL Template Library is used as database of templates. Only target-template alignments found by HHblits and only residues with atom coordinates are considered.
This chart shows the percentage of residues in the Caenorhabditis elegans proteome which are covered by experimental structures and the enhancement of coverage by homology modelling by the SWISS-MODEL pipeline. Experimental residue coverage is determined using SIFTS mapping. For residues which are not covered by experimental structures (including where there are no atom records in SIFTS mapping) the model coverage bars are coloured by QMEANDisCo local quality score.
Many proteins form oligomeric structures either by self-assembly (homo-oligomeric) or by assembly with other proteins (hetero-oligomeric) to accomplish their function. In SWISS-MODEL Repository, the quaternary structure annotation of the template is used to model the target sequence in its oligomeric form. Currently our method is limited to the modelling of homo-oligomeric assemblies. The oligomeric state of the template is only considered if the interface is conserved.
Single Chain | 2-mer | 3-mer | 4-mer | 5-mer | 6-mer | 7-mer | 8-mer | 9-mer | 10-mer | 12-mer | 14-mer | 16-mer | 18-mer | 20-mer | 24-mer | 26-mer | 32-mer | 40-mer | 41-mer | 44-mer | 48-mer | 55-mer | 60-mer | 62-mer |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19,477 | 1,835 | 168 | 384 | 99 | 96 | 8 | 39 | 8 | 12 | 33 | 3 | 8 | 1 | 1 | 10 | 1 | 6 | 5 | 3 | 2 | 1 | 2 | 2 | 1 |