A0A0L8VKM5 | SWISS-MODEL Repository

A0A0L8VKM5 (A0A0L8VKM5_9SACH) Saccharomyces boulardii (nom inval)

CDC45p DNA replication initiation factor UniProtKB InterPro Interactive Modelling

650 aa; Sequence (Fasta) ; 3 identical sequences: Saccharomyces cerevisiae: N1NZL5, Q08032, B3LT71

It is possible new templates exist for this target since these models were created.

Available Structures

28 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of the Sld3 Cdc45-binding-domain, in complex with Cdc45	8j09 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P53135; Q08032;	1-650	100.0
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Yeast replisome in state I	8kg6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q12146; Q12488;	1-650	100.0	7×ZN; 2×ADP; 5×MG; 3×AGS;
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S. cerevisiae pol alpha - replisome complex	8b9c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P10363; P13382; P20457; P24279; P25588; P29469; P29496; P30665; P38121; P38132; P40359; P53091; P53840; Q03406; Q04659; Q08032; Q12146; Q12488;	1-650	100.0	4×ANP; 4×MG; 4×ZN;
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S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation I)	7pmk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P52286; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q08496; Q12146; Q12488;	1-650	100.0	3×ANP; 3×MG; 7×ZN;
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Cryo-EM structure of the CMG Fork Protection Complex at a replication fork - Conformation 1	6skl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q12146; Q12488;	1-650	100.0	5×ZN; 3×ANP; 3×MG;
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S. cerevisiae replisome + Ctf4, bound by pol alpha primase. Complex engaged with a fork DNA substra…	8b9a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P10363; P13382; P20457; P24279; P25588; P29469; P29496; P30665; P38121; P38132; P40359; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q12146; Q12488;	1-650	100.0	4×ANP; 4×MG; 4×ZN;
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Yeast replisome in state V	8w7m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488;	1-650	100.0	2×ADP; 4×MG; 5×ZN; 2×AGS;
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S. cerevisiae replisome + Ctf4, bound by pol alpha. Complex engaged with a fork DNA substrate conta…	8b9b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P10363; P13382; P20457; P24279; P25588; P29469; P29496; P30665; P38121; P38132; P40359; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q12146; Q12488;	1-650	100.0	4×ANP; 4×MG; 4×ZN;
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Yeast replisome in state II	8kg8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488;	1-650	100.0	7×ZN; 2×ADP; 5×MG; 3×AGS;
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Yeast replisome in state III	8kg9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488;	1-650	100.0	7×ZN; 2×ADP; 4×MG; 2×AGS;
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Yeast replisome in state IV	8w7s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P24482; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488;	1-650	100.0
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S. cerevisiae CMGE nucleating origin DNA melting	7qhs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P30665; P38132; P53091; Q03406; Q08032; Q12146;	1-650	100.0	4×ATP; 7×ZN; 3×MG; 2×ADP;
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S. cerevisiae CMGE dimer nucleating origin DNA melting	7z13 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P30665; P53091; Q03406; Q08032; Q12146;	1-650	100.0	8×ATP; 14×ZN; 6×MG; 4×ADP;
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S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation II)	7pmn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P52286; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q08496; Q12488;	1-650	100.0	2×ANP; 2×MG; 7×ZN;
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Structure of yeast replisome associated with FACT and histone hexamer, Composite map	8xgc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02294; P02309; P04911; P21951; P24279; P24482; P25588; P29469; P29496; P30665; P32558; P38132; P40359; P53091; P53840; P61830; Q01454; Q03406; Q04636; Q04659; Q08032; Q12146; Q12488;	1-650	100.0	7×ZN; 5×ADP;
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S. cerevisiae nexus-sCMGE after DNA replication initiation	8p5e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	1-649	100.0	4×ATP; 7×ZN; 3×MG; 2×ADP;
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S. cerevisiae ssDNA-sCMGE after DNA replication initiation	8p62 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	1-649	100.0	4×ATP; 7×ZN; 3×MG; 2×ADP;
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S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation	8p63 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	1-649	100.0	4×ATP; 7×ZN; 3×MG; 2×ADP;
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Structure of the eukaryotic replicative CMG helicase and pumpjack motion	3jc5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	5-650	99.46
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Structure of the eukaryotic replicative CMG helicase and pumpjack motion	3jc7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	5-650	99.46	1×ZN;
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Structure of Ctf4 trimer in complex with three CMG helicases	6pto PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488;	5-650	100.0	6×ATP;
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Structure of Ctf4 trimer in complex with two CMG helicases	6ptn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488;	5-650	100.0	6×ATP;
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Structure of the S. cerevisiae replicative helicase CMG in complex with a forked DNA	6u0m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	5-650	100.0	3×ATP;
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Structure of the eukaryotic replicative CMG helicase and pumpjack motion	3jc6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	5-650	100.0	1×ZN;
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Structure of Ctf4 trimer in complex with one CMG helicase	6ptj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488;	5-650	100.0
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Structure of Eukaryotic CMG Helicase at a Replication Fork and Implications	5u8t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	5-650	100.0	3×ANP;
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Structure of eukaryotic CMG helicase at a replication fork	5u8s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	5-650	100.0	3×ATP;
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S. cerevisiae CMG-Pol epsilon-DNA	6hv9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q03406; Q08032; Q12146; Q12488;	6-650	100.0	2×AGS; 2×ZN;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	6skl.1.K	monomer	0.77	1-650		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A0A0L8VKM5 (A0A0L8VKM5_9SACH) Saccharomyces boulardii (nom inval)

CDC45p DNA replication initiation factor UniProtKBInterProInteractive Modelling

Available Structures

28 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

CDC45p DNA replication initiation factor UniProtKB InterPro Interactive Modelling