A0A1B2J5R9 | SWISS-MODEL Repository

A0A1B2J5R9 (A0A1B2J5R9_PICPA) Komagataella pastoris (Yeast) (Pichia pastoris)

DNA-directed RNA polymerases I, II, and III subunit RPABC1 UniProtKB InterPro Interactive Modelling

214 aa; Sequence (Fasta) ; 2 identical sequences: Komagataella phaffii: F2QX94, C4R3P8

It is possible new templates exist for this target since these models were created.

Available Structures

37 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
RNA Polymerase II from Komagataella Pastoris (Type-2 crystal)	5x50 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QPE6;	1-214	100	8×ZN;
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RNA Polymerase II from Komagataella Pastoris (Type-3 crystal)	5x51 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QPE6;	1-214	100	8×ZN;
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RNA Polymerase II from Komagataella Pastoris (Type-1 crystal)	5x4z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QPE6;	1-214	100	8×ZN;
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RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1	5xog PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A1B2JER8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; F2QUC3;	2-214	100	9×ZN; 1×MG; 1×APC;
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RNA polymerase II elongation complex transcribing a nucleosome (EC58oct)	7xtd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QYQ8; C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R4Y0; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QNN8; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex transcribing a nucleosome (EC42)	7xse PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R4Y0; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex transcribing a nucleosome (EC58hex)	7xti PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QYQ8; C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R4Y0; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QNN8; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA	6a5l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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RNA Polymerase II elongation complex bound with Spt4/5 and TFIIS	5xon PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QWA8; C4QY79; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2R6; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome	6a5o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome	6a5p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA (+1 pos…	6inq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex stalled at SHL(-2) of the nucleosome	6a5r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft	8yfr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QWA8; C4QXY9; C4QY79; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R5R1; C4R7L2; C4R9A1;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome	6a5t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA, tilt c…	6a5u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II transcribing a chromatosome (type I)	8h0v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P16403; P62805; P68431;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleoso…	7wbv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II transcribing a chromatosome (type II)	8h0w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P16403; P62805; P68431;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleo…	7wbw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-5) of the nucleoso…	6j4w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; F2QTN1; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleoso…	6j4x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleoso…	7wbx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex transcribing a nucleosome (EC49)	7xsx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QYQ8; C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R4Y0; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QNN8; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleoso…	6j4y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the n…	6j4z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	9×ZN; 1×MG;
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RNA polymerase II elongation complex transcribing a nucleosome (EC115)	7xsz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R4Y0; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex containing Spt4/5, Elf1, Spt6, Spn1 and Paf1C	7xn7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3Z5; C4R4Y0; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QPE6; F2QQ42; F2QX94;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleos…	8he5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QY79; C4QZ45; C4QZQ7; C4R009; C4R198; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; P04908; P06899; P62805; P68431;	2-214	100	9×ZN; 1×MG;
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RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the …	8jh4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the …	8jh3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	8×ZN; 1×MG;
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RNA polymerase II elongation complex transcribing a nucleosome (EC49B)	7xt7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R4Y0; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QNN8; F2QPE6; F2QPX0; F2QQ42; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of…	8jh2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the n…	6j51 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the n…	6j50 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	9×ZN; 1×MG;
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RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleoso…	6ir9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome containing histone varian…	9ii7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C4QZ45; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R4Y0; C4R7L2; C4R9A1; F2QMI1; F2QPE6; F2QTA2; P06899; P0C5Z0; P62805; P84243;	2-214	100	10×ZN; 1×MG;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	8yfq.1.E	monomer	0.83	3-214		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A0A1B2J5R9 (A0A1B2J5R9_PICPA) Komagataella pastoris (Yeast) (Pichia pastoris)

DNA-directed RNA polymerases I, II, and III subunit RPABC1 UniProtKBInterProInteractive Modelling

Available Structures

37 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

DNA-directed RNA polymerases I, II, and III subunit RPABC1 UniProtKB InterPro Interactive Modelling