A0A1L8F5J9 | SWISS-MODEL Repository

A0A1L8F5J9 (NMDZ1_XENLA) Xenopus laevis (African clawed frog)

Glutamate receptor ionotropic, NMDA 1 UniProtKB InterPro STRING Interactive Modelling

903 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5; Isoform 6; Isoform 7; Isoform 8)

Available Structures

31 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of GluN1/GluN2B NMDA receptor, structure 1	4tll PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-836	98.21	4×NAG; 1×1AC; 2×QEM; 1×JEG;
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Crystal structure of GluN1/GluN2B NMDA receptor, structure 2	4tlm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-836	98.2	7×NAG; 1×1AC; 2×QEM; 1×JEG;
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Triheteromeric NMDA receptor GluN1/GluN2A/GluN2B in complex with glycine, glutamate, Ro 25-6981, MK…	5up2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94; B7ZSK1;	23-836	98.12	4×NAG; 1×NAG;
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Triheteromeric NMDA receptor GluN1/GluN2A/GluN2B in complex with glycine, glutamate, MK-801 and a G…	5uow PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94; B7ZSK1;	23-836	98.12	8×NAG; 1×GLU; 1×BMK;
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the glutamate/glycine-bound conformation	5iou PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-834	98.23	2×GLY; 2×GLU;
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the glutamate/glycine/Ro25-6981-bound conformati…	5iov PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-834	98.23	2×GLY; 2×QEM; 2×GLU;
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 2	5ipq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-800	98.07
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 3	5ipr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-800	98.07
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 4	5ips PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-800	98.07
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 5	5ipt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-800	98.07
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 6	5ipu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-800	98.05
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Cryo-EM structure of GluN1/GluN2B NMDA receptor in the DCKA/D-APV-bound conformation, state 1	5ipv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	23-797	98.07
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Crystal structure of GluN1/GluN2B delta-ATD NMDA receptor	5un1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7XY94;	394-834	97.35	1×GLY; 3×NAG; 1×TRS; 3×GLU; 1×BMK; 1×Y01;
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Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor…	6e7u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-386	99.16	1×NAG; 3×NAG; 1×NA; 6×CL; 1×HX7;
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Crystal structure of amino terminal domains of the NMDA receptor subunit GluN1 and GluN2A in the pr…	5tq0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00959;	24-387	99.16	2×NAG; 2×GOL; 12×SO4; 1×IPA;
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CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2B IN COMPLE…	5ewm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q13224;	23-386	99.44	1×NAG; 4×NA; 3×NAG; 1×5SM;
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CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2B IN COMPLE…	5ewj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q13224;	23-386	99.44	1×NAG; 1×NA; 3×NAG; 1×QEL;
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Crystal structure of amino terminal domains of the NMDA receptor subunit GluN1 and GluN2A in comple…	5tpw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00959;	24-387	99.16	2×NAG; 6×SO4; 2×GOL; 1×ZN;
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CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAINS OF THE NMDA RECEPTOR SUBUNIT GLUN1 AND GLUN2B IN COMPLE…	5ewl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q13224;	23-386	99.44	1×NAG; 5×NA; 3×NAG; 1×5SL;
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Crystal structure of amino terminal domains of the NMDA receptor subunit GluN1 and GluN2A in comple…	5tq2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00959;	24-387	99.17	2×ZN; 2×NAG; 4×SO4; 2×GOL;
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Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor…	6e7r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.16	1×NAG; 4×NAG; 1×NA; 6×CL; 1×HYS;
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Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor…	6e7t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.43	1×NAG; 3×NAG; 1×NA; 6×CL; 1×HYY;
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Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor…	6e7x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.16	1×NAG; 3×NAG; 1×NA; 5×CL; 1×T97;
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Crystal structure of amino terminal domains of the NMDA receptor subunit GluN1 and GluN2B in comple…	3qel PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.43	1×NAG; 1×NA; 5×NAG; 2×QEL;
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Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor…	6e7v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.16	1×NAG; 3×NAG; 1×NA; 6×CL; 1×T88;
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Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor…	6e7w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.16	1×NAG; 4×NAG; 1×NA; 6×CL; 1×HXM;
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Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor…	6e7s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.16	1×NAG; 4×NAG; 1×NA; 5×CL; 1×HZ4;
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Crystal structure of amino terminal domains of the NMDA receptor subunit GluN1 and GluN2B in comple…	3qem PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.43	1×NAG; 3×NAG; 1×NA; 1×QEM;
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Crystal structure of amino terminal domains of the NMDA receptor subunit GluN1 and GluN2B in apo cl…	5tpz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	23-384	99.15	4×NAG;
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Activation of NMDA receptors and the mechanism of inhibition by ifenprodil	5b3j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q00960;	25-384	99.13
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Crystal structure of amino terminal domain of the NMDA receptor subunit GluN1	3qek PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	23-384	99.43	1×NAG; 1×K; 2×NAG;
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3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
6whs.1.C	monomer	0.71	25-839		91.20
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7ldd.1.D	monomer	0.58	275-838		34.78
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5jty.1.A	monomer	0.54	396-792	1×2JK;	89.90
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A0A1L8F5J9 (NMDZ1_XENLA) Xenopus laevis (African clawed frog)

Glutamate receptor ionotropic, NMDA 1 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

31 Experimental Structures

3 SWISS-MODEL models

Alignments

Background

Resolution

Glutamate receptor ionotropic, NMDA 1 UniProtKB InterPro STRING Interactive Modelling