A0A411PVI8 | SWISS-MODEL Repository

A0A411PVI8 (A0A411PVI8_CARIL) Carya illinoinensis (Pecan)

Photosystem II protein D1 UniProtKB Protein Atlas InterPro Interactive Modelling

353 aa; Sequence (Fasta) ; 925 identical sequences

It is possible new templates exist for this target since these models were created.

However, an attempt to improve models for this target was made on 2025-04-28. The outcome - failed for technical reasons.

Available Structures

2 Experimental Structures

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	Cryo-EM structure of the PSII supercomplex from Arabidopsis thaliana	5mdx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04778; P23321; P56761; P56777; P56778; P56779; P56780; P56782; P56790; P60129; P61839; P62095; P62100; P62109; P83755; Q07473; Q39194; Q9LMQ2; Q9SKI3; Q9XF89;	11-340	100.0	2×FE2; 212×CLA; 4×PHO; 2×HEM; 96×CHL;
	Download Compare Structure Assessment
	Structure of C2S2M2-type Photosystem supercomplex from Arabidopsis thaliana (digitonin-extracted)	7oui PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A7G2E9B1; P04778; P23321; P56761; P56777; P56778; P56779; P56780; P56782; P56790; P60129; P61839; P62095; P62100; P62109; P83755; Q07473; Q39142; Q39194; Q39195; Q9LMQ2; Q9S7M0; Q9XF89;	11-336	100	60×CHL; 162×CLA; 30×LHG; 4×PHO; 22×BCR; 8×SQD; 12×LMG; 4×PL9; 22×AJP; 2×BCT; 2×FE2; 8×DGD; 4×CA; 2×CL; 2×HEM; 18×LUT; 10×NEX; 2×XAT;
	Download Compare Structure Assessment

1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	4yuu.1.A	monomer	0.75	1-344		89.83
	Download ModelCIF format PDB format Model report Compare Structure Assessment

	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Alignments