A1KIH9 | SWISS-MODEL Repository

A1KIH9 (RPOZ_MYCBP) Mycobacterium bovis (strain BCG / Pasteur 1173P2)

DNA-directed RNA polymerase subunit omega UniProtKB InterPro Interactive Modelling

110 aa; Sequence (Fasta) ; 14 identical sequences

Available Structures

70 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 7 nt	6koo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	26-108	100.0	2×ZN; 1×MG;
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Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 9 nt	6kop PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	26-108	100.0	2×ZN; 1×MG;
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Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 10 nt	6koq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	26-108	100.0	2×ZN; 1×MG;
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Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_LG)	8eoe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; Q06795;	27-109	100	1×MG; 2×ZN;
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Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 transcription fac…	7kif PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3; Q6MX01;	27-109	100	2×ZN; 1×MG; 1×SF4;
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Mycobacterium tuberculosis transcription elongation complex with Bacillus subtilis NusG (EC_PG)	8eof PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; Q06795;	27-109	100	1×MG; 2×ZN;
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Cryo-EM structure of Mycobacterium tuberculosis transcription initiation complex with transcription…	8hih PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O53830; P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	27-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis RNAP with RbpA/us fork and Corallopyronin	6m7j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;	27-109	100	2×ZN; 1×MG; 1×C0L;
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Mycobacterium tuberculosis RNAP paused elongation complex	8e8m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	27-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis WT RNAP transcription closed promoter complex with WhiB7 transcription f…	7kim PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3; Q6MX01;	27-109	100	2×ZN; 1×MG; 1×SF4;
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Mycobacterium tuberculosis WT RNAP transcription open promoter complex with WhiB7 promoter	7kin PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;	27-109	100	2×ZN; 1×MG;
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Mtb RNAP Holo/RbpA/Fidaxomicin/upstream fork DNA	6bzo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;	27-109	100	1×FI8; 2×ZN; 1×MG;
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Mycobacterium tuberculosis paused transcription complex with Bacillus subtilis NusG	8ehq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; Q06795;	27-109	100	1×MG; 2×ZN;
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M. tuberculosis RNAP elongation complex with NusG and CMPCPP	8eos PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WIU9;	27-109	100	1×2TM; 2×MG; 2×ZN;
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Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter	6edt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;	27-109	100	2×ZN; 1×MG;
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Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with two PhoP mole…	9ket PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P71814; P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	27-109	100	2×ZN; 1×MG;
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M. tuberculosis RNAP elongation complex with NusG	8eot PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WIU9;	27-109	100	1×MG; 2×ZN;
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Cryo-EM structure of Mycobacterium tuberculosis RNA polymerase holoenzyme octamer comprising sigma …	7q4u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-110	100	16×ZN; 8×MG;
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Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with four PhoP mol…	9keu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P71814; P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	27-109	100	2×ZN; 1×MG;
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Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with six PhoP mole…	9kev PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P71814; P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	27-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis WT RNAP transcription initiation intermediate structure with Sorangicin	6vvx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;	27-109	100	1×SRN; 2×ZN; 1×MG;
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Mycobacterium tuberculosis WT RNAP transcription open promoter complex with Sorangicin	6vvy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;	27-109	100	1×SRN; 2×ZN; 1×MG;
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M. tuberculosis RNAP paused complex with B. subtilis NusG and GMPCPP	8exy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; Q06795;	27-109	100	1×MG; 2×ZN; 1×G2P;
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Mycobacterium tuberculosis RNAP S456L mutant transcription initiation intermediate structure with S…	6vvz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;	27-109	100	1×SRN; 2×ZN; 1×MG;
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Mycobacterium tuberculosis RNAP S456L mutant open promoter complex	6vw0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;	27-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis RNAP Holo/RbpA/Fidaxomicin	6c06 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;	27-109	100	2×ZN; 1×MG; 1×FI8;
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Mtb RNAP Holo/RbpA/double fork DNA -closed clamp	6c04 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;	27-109	100	2×ZN; 1×MG;
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M. tuberculosis RNAP pause escaped complex with Bacillus subtilis NusG and GMPCPP	8ej3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; Q06795;	27-109	100	1×G2P; 2×MG; 2×ZN;
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Mycobacterium tuberculosis RNAP Holo/RbpA in relaxed state	6c05 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;	27-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis RNAP paused elongation complex with NusG transcription factor	8e74 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WIU9;	27-109	100	2×ZN; 1×MG;
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Cryo-EM structure of Mycobacterium tuberculosis transcription activation complex with unphosphated …	9ji2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	27-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 prom…	6ee8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;	27-109	100	2×ZN; 1×MG;
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Cryo-EM structure of Mycobacterium tuberculosis RNA polymerase holoenzyme dimer comprising sigma fa…	7q59 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-110	100	4×ZN; 2×MG;
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Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 prom…	6eec PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;	27-109	100	1×C0L; 2×ZN; 1×MG;
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Cryo-EM structure of Mycobacterium tuberculosis sigma-B RNA polymerase bound to -10 promoter elemen…	9fjp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-110	100	2×ZN; 1×MG;
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Cryo-EM structure of Mycobacterium tuberculosis sigma-B RNA polymerase bound to -10 promoter elemen…	9fjr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-110	100	2×ZN; 1×MG;
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Single particle cryo em structure of Mycobacterium tuberculosis RNA polymerase in complex with Fida…	6fbv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-110	100	2×ZN; 1×MG; 1×FI8;
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Cryo-EM structure of Mycobacterium tuberculosis RNA polymerase holoenzyme comprising sigma factor S…	7pp4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-110	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis RNA polymerase holoenzyme with ECF sigma factor sigma H	5zx3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	27-108	100.0	2×ZN;
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Mycobacterium tuberculosis RNA polymerase transcription initiation complex with ECF sigma factor si…	5zx2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-109	100.0	2×ZN;
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Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF…	6jcy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGG7; P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	27-108	100.0	2×ZN; 1×MG;
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Cryo-EM structure of Mycobacterium tuberculosis sigma-B RNA polymerase bound to -10 promoter elemen…	9fjs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis RNAP elongation complex with NusG transcription factor	8e82 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WIU9;	28-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis RNAP elongation complex	8e95 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis RNAP paused elongation complex with Escherichia coli NusG transcription …	8e79 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0AFG0; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-109	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 5 nt	6kon PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100.0	2×ZN; 1×MG;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L…	6dvc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN;
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Crystal structure of MTB sigma L transcription initiation complex with 9 nt long RNA primer	6tyg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100
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Mycobacterium tuberculosis RNA polymerase sigma L holoenzyme open promoter complex containing TNP-2…	7rwi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	1×7US;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3 nt of…	5uh5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN; 1×MG;
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Crystal structure of MTB sigma L transcription initiation complex with 5 nt long RNA primer	6tye PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3nt RNA…	5uhc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	1×RFP; 2×ZN; 1×MG;
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Crystal structure of MTB sigma L transcription initiation complex with 6 nt long RNA primer	6tyf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L…	6dv9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	1×MG; 2×ZN;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L…	6dvb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF selenomethioni…	6dve PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 2ntRNA …	5uh6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	1×RFP; 2×ZN; 1×MG;
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Mycobacterium tuberculosis RNA polymerase sigma A holoenzyme open promoter complex containing UMN-7	7u22 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	1×KYO; 2×ZN; 1×MG;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor L…	6dvd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex	5uha PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN; 1×MG;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-…	5uhg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	1×RFP; 2×ZN; 1×MG; 1×88G;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNA…	5uhd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	1×RFP; 2×ZN; 1×MG;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-…	5uhe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN; 1×MG; 1×88G;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNA	5uh8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN; 1×MG;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with Ri…	5uhb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	1×RFP; 2×ZN; 1×MG;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-…	5uhf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN; 1×MG; 1×88D;
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 2nt RNA	5uh9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN; 1×MG;
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Cryo-EM structure of Mycobacterium tuberculosis RNA polymerase core	7z8q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN; 1×MG;
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Protomeric substructure from an octameric assembly of M. tuberculosis RNA polymerase in complex wit…	7zf2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGI5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	28-108	100	2×ZN; 1×MG;
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Mycobacterium tuberculosis transcription initiation complex with ECF sigma factor sigma H and 6nt R…	6jcx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;	30-108	100.0	2×ZN; 1×MG;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7p5x.1.E	monomer	0.78	21-109		81.31
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

A1KIH9 (RPOZ_MYCBP) Mycobacterium bovis (strain BCG / Pasteur 1173P2)

DNA-directed RNA polymerase subunit omega UniProtKBInterProInteractive Modelling

Available Structures

70 Experimental Structures

1 SWISS-MODEL model

Alignments

Background

Resolution

DNA-directed RNA polymerase subunit omega UniProtKB InterPro Interactive Modelling