A1KPE3 (RPOA_MYCBP) Mycobacterium bovis (strain BCG / Pasteur 1173P2)

DNA-directed RNA polymerase subunit alpha UniProtKBInterProInteractive Modelling

347 aa; Sequence (Fasta) 13 identical sequences

Sequence Features

 24-218DNA-directed RNA polymerase, RpoA/D/Rpb3-type
IPR011263PF01193
 57-149DNA-directed RNA polymerase, insert domain
IPR011262PF01000
 241-302RNA polymerase, alpha subunit, C-terminal
IPR011260PF03118

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Mtb RNAP Holo/RbpA/Fidaxomicin/upstream fork DNA Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;
MG;FI8;ZN;6bzo1-237
Mycobacterium tuberculosis RNAP open promoter complex with RbpA/CarD and AP3 promoter Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
ZN;MG;6edt1-237
Mtb RNAP Holo/RbpA/double fork DNA -closed clamp Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;
ZN;MG;6c041-237
Mycobacterium tuberculosis RNAP Holo/RbpA in relaxed state Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;
ZN;MG;6c051-237
Mycobacterium tuberculosis RNAP Holo/RbpA/Fidaxomicin Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5;
ZN;FI8;MG;6c061-237
'Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 p... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
ZN;MG;6ee81-237
'Mycobacterium tuberculosis RNAP promoter unwinding intermediate complex with RbpA/CarD and AP3 p... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1; P9WHJ5; P9WJG3;
ZN;C0L;MG;6eec1-237
Mycobacterium tuberculosis RNAP with RbpA/us fork and Corallopyronin Heteromer
A5U8D3; P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WHJ5;
ZN;C0L;MG;6m7j1-237
'Mycobacterium tuberculosis transcription initiation complex with ECF sigma factor sigma H and 6n... Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;6jcx1-236
Mycobacterium tuberculosis RNA polymerase holoenzyme with ECF sigma factor sigma H Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;5zx31-235
'Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ... Heteromer
P9WGG7; P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;6jcy1-235
'Mycobacterium tuberculosis RNA polymerase transcription initiation complex with ECF sigma factor... Heteromer
P9WGH9; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;5zx21-234
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor... Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
MG;ZN;6dv91-233
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor... Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;6dvc1-232
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor... Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;6dvb1-232
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF selenomethio... Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;6dve1-232
Crystal structure of Mycobacterium tuberculosis transcription initiation complex(ECF sigma factor... Heteromer
P9WGH5; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;6dvd1-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3 nt... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;5uh53-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3nt ... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;RFP;MG;5uhc3-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 2ntR... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;RFP;MG;5uh63-232
Crystal structure of Mycobacterium tuberculosis transcription initiation complex Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;5uha3-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;RFP;88G;MG;5uhg3-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt ... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;RFP;MG;5uhd3-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;88G;MG;5uhe3-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt ... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;5uh83-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;RFP;MG;5uhb3-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;88D;5uhf3-232
'Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 2nt ... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;MG;5uh93-232
'Single particle cryo em structure of Mycobacterium tuberculosis RNA polymerase in complex with F... Heteromer
P9WGI1; P9WGY5; P9WGY7; P9WGY9; P9WGZ1;
ZN;FI8;MG;6fbv3-232

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer -4.194mex.1.B2-317
42.36
monomer -3.994mex.1.A2-318
42.36