A2APX8 (SCN1A_MOUSE) Mus musculus (Mouse)

Sodium channel protein type 1 subunit alpha UniProtKBInterProSTRINGInteractive Modelling

2009 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; )

Sequence Features

 919Interchain; with SCN2B or SCN4B
 919Interchain; with the conotoxin GVIIJ (when the channel is not linked to SCN2B or SCN4B; the bond to SCN2B or SCN4B protects the channel from the inhibition by toxin)
 129-147Helical; Name=S1 of repeat I
 155-175Helical; Name=S2 of repeat I
 190-207Helical; Name=S3 of repeat I
 214-230Helical; Name=S4 of repeat I
 250-269Helical; Name=S5 of repeat I
 368-392Pore-forming
 400-420Helical; Name=S6 of repeat I
 769-787Helical; Name=S1 of repeat II
 799-818Helical; Name=S2 of repeat II
 833-852Helical; Name=S3 of repeat II
 855-872Helical; Name=S4 of repeat II
 889-907Helical; Name=S5 of repeat II
 937-957Pore-forming
 971-991Helical; Name=S6 of repeat II
 1220-1237Helical; Name=S1 of repeat III
 1251-1269Helical; Name=S2 of repeat III
 1284-1302Helical; Name=S3 of repeat III
 1311-1329Helical; Name=S4 of repeat III
 1347-1366Helical; Name=S5 of repeat III
 1419-1440Pore-forming
 1458-1479Helical; Name=S6 of repeat III
 1543-1560Helical; Name=S1 of repeat IV
 1572-1590Helical; Name=S2 of repeat IV
 1603-1620Helical; Name=S3 of repeat IV
 1634-1650Helical; Name=S4 of repeat IV
 1670-1687Helical; Name=S5 of repeat IV
 1710-1732Pore-forming
 1763-1785Helical; Name=S6 of repeat IV
 277-345
 959-968
 127-433Ion transport domain
IPR005821PF00520
 505-718Voltage-gated Na+ ion channel, cytoplasmic domain
IPR024583PF11933
 769-996Ion transport domain
IPR005821PF00520
 1006-1213Sodium ion transport-associated
IPR010526PF06512
 1217-1491Ion transport domain
IPR005821PF00520
 1541-1796Ion transport domain
IPR005821PF00520

Sequence Alignments

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer -0.394dck.1.A1790-1942
73.62

Homology models built on isoform sequence

Isoform #Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
3monomer-0.394dck.1.A1762-1914
73.62
2monomer-0.394dck.1.A1779-1931
73.62