A6HGJ0 (A6HGJ0_RAT) Rattus norvegicus (Rat)
Transient receptor potential cation channel subfamily V member 1 UniProtKBInterProInteractive Modelling
838 aa; Sequence (Fasta) ;
1 identical sequence: Rattus norvegicus: O35433
It is possible new templates exist for this target since these models were created.
Available Structures
61 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| cryo-EM structure of unliganded minimal TRPV1 |
Heteromer O35433; | 100 | 4×XJ7; 4×6IY; 1×NA; | |||
| Cryo-EM structure of minimal TRPV1 with 1 partially bound RTX |
Heteromer O35433; | 100 | 1×6EU; 3×XJ7; 1×NA; | |||
| Cryo-EM structure of DkTx-bound minimal TRPV1 at the pre-open state |
Heteromer O35433; P0CH43; | 100 | 4×XJ7; 4×65I; 1×NA; | |||
| Structure of TRPV1 ion channel in complex with DkTx and RTX determined by single particle electron … |
Heteromer O35433; P0C247; | 100.0 | ||||
| cryo-EM structure of DkTx-bound minimal TRPV1 in partial open state |
Heteromer O35433; P0CH43; | 100 | 4×XJ7; 1×NA; 4×65I; | |||
| cryo-EM structure of DkTx-bound minimal TRPV1 in open state |
Heteromer O35433; P0CH43; | 100.0 | 4×XJ7; 4×XKP; 2×NA; | |||
| Cryo-EM structure of DkTx/RTX-bound full-length TRPV1 |
Heteromer O35433; P0CH43; | 100.0 | 4×6EU; 3×NA; | |||
| Structure of TRPV1 in complex with DkTx and RTX, determined in lipid nanodisc |
Heteromer O35433; P0CH43; | 100 | 4×6O8; 8×6OE; 4×6EU; 4×6O9; | |||
| TRPV1 in nanodisc bound with PI-Br4 bound in Conformation 1 (monomer) |
Heteromer O35433; | 100.0 | 1×VPN; 1×PCW; 1×NA; | |||
| TRPV1 in nanodisc bound with PI-Br4 bound in Conformation 2 (monomer) |
Heteromer O35433; | 100.0 | 1×VPN; 1×PCW; 1×3PH; 1×NA; | |||
| Crystal structure of ca2+-calmodulin in complex with a trpv1 c-terminal peptide |
Heteromer O35433; P0DP23; | 100 | 4×CA; 1×SO4; | |||
| Cryo-EM structure of full-length TRPV1 at 4 degrees Celsius | homo-4-mer | 100.0 | 4×T7X; 8×LBN; 28×6OU; 2×NA; 4×YFP; | |||
| cryo-EM structure of DkTx-bound minimal TRPV1 at the pre-bound state | homo-4-mer | 100 | 4×XJ7; 4×6IY; 1×NA; | |||
| Cryo-EM structure of the full-length TRPV1 with RTx at 4 degrees Celsius, in a closed state, class I | homo-4-mer | 100.0 | 4×6EU; 8×LBN; 20×6OU; 4×YFP; 2×NA; | |||
| Cryo-EM structure of minimal TRPV1 with 1 perturbed PI | homo-4-mer | 100 | 4×XJ7; 4×6IY; 1×NA; | |||
| Cryo-EM structure of full-length TRPV1 with capsaicin at 4 degrees Celsius | homo-4-mer | 100.0 | 8×LBN; 12×6OU; 4×4DY; 4×YFP; 2×NA; | |||
| Cryo-EM structure of full-length TRPV1 with capsaicin at 25 degrees Celsius | homo-4-mer | 100.0 | 8×LBN; 12×6OU; 4×YFP; 4×4DY; | |||
| Cryo-EM structure of the full-length TRPV1 with RTx at 4 degrees Celsius, in an intermediate-closed… | homo-4-mer | 100.0 | 4×LBN; 12×6OU; 4×6EU; 2×NA; | |||
| Reconstruction of TRPV1 ion channel in complex with capsaicin by single particle cryo-microscopy | homo-4-mer | 100.0 | ||||
| Structure of TRPV1 ion channel determined by single particle electron cryo-microscopy | homo-4-mer | 100.0 | ||||
| Cryo-EM structure of minimal TRPV1 with 2 bound RTX in adjacent pockets | homo-4-mer | 100 | 2×XJ7; 2×6EU; 1×NA; | |||
| TRPV1 in nanodisc bound with PI-Br4, consensus structure | homo-4-mer | 100.0 | 4×VPN; 1×NA; | |||
| TRPV1 in nanodisc bound with PIP2-Br4 | homo-4-mer | 100 | 4×V5H; 4×PCW; 1×NA; | |||
| Cryo-EM structure of minimal TRPV1 with 4 partially bound RTX | homo-4-mer | 100 | 4×6EU; 1×NA; | |||
| Cryo-EM structure of minimal TRPV1 with 2 bound RTX in opposite pockets | homo-4-mer | 100 | 2×XJ7; 1×NA; 2×6EU; | |||
| Cryo-EM structure of minimal TRPV1 with 3 bound RTX and 1 perturbed PI | homo-4-mer | 100 | 1×XJ7; 3×6EU; 1×NA; | |||
| cryo-EM structure of RTX-bound minimal TRPV1 with NMDG at state b | homo-4-mer | 100 | 4×6EU; 1×XPS; 1×NA; | |||
| cryo-EM structure of RTX-bound minimal TRPV1 with NMDG at state a | homo-4-mer | 100 | 4×6EU; 4×6IY; 1×NA; | |||
| Cryo-EM structure of unliganded full-length TRPV1 at neutral pH | homo-4-mer | 100.0 | 4×XJ7; 4×XJD; 1×NA; | |||
| cryo-EM structure of RTX-bound minimal TRPV1 with NMDG at state c | homo-4-mer | 100 | 4×6EU; 4×6IY; 1×XPJ; | |||
| TRPV1 in nanodisc bound with empty vanilloid binding pocket at 25C | homo-4-mer | 100 | 4×3PH; 1×NA; | |||
| TRPV1 in nanodisc bound with empty vanilloid binding pocket at 4C | homo-4-mer | 100 | 4×3PH; 1×NA; | |||
| Cryo-EM structure of the full-length TRPV1 with RTx at 4 degrees Celsius, in an open state, class I… | homo-4-mer | 100.0 | 4×6EU; 4×PCW; 4×LBN; 8×6OU; | |||
| Cryo-EM structure of the full-length TRPV1 with RTx at 25 degrees Celsius, in an open state, class B | homo-4-mer | 100.0 | 4×6EU; 4×LBN; 8×6OU; | |||
| TRPV1 in nanodisc bound with diC8-PIP2 in the closed state | homo-4-mer | 100 | 4×PIO; 1×NA; | |||
| Cryo-EM structure of the full-length TRPV1 with RTx at 48 degrees Celsius, in an open state, class … | homo-4-mer | 100.0 | 4×6EU; 8×LBN; 8×6OU; | |||
| TRPV1 in Nanodisc bound with lysophosphatidic acid in all four monomers | homo-4-mer | 100 | 4×NKN; 2×NA; | |||
| Cryo-EM structure of minimal TRPV1 with RTX bound in C2 state | homo-4-mer | 100 | 4×6EU; 2×NA; | |||
| Cryo-EM structure of full-length TRPV1 at pH6a state | homo-4-mer | 100.0 | 4×XJA; | |||
| TRPV1 in Nanodisc not bound with lysophosphatidic acid (apo) | homo-4-mer | 100 | 4×8IJ; 1×NA; | |||
| TRPV1 in nanodisc bound with diC8-PIP2 in the dilated state | homo-4-mer | 100.0 | 4×PIO; 4×PCW; 4×CLR; 1×NA; | |||
| Cryo-EM structure of full-length TRPV1 at pH6c state | homo-4-mer | 100.0 | 4×XJ7; | |||
| Cryo-EM structure of minimal TRPV1 with RTX bound in C1 state | homo-4-mer | 100 | 4×6EU; 2×NA; | |||
| Cryo-EM structure of the full-length TRPV1 with RTx at 25 degrees Celsius, in an intermediate-open … | homo-4-mer | 100.0 | 8×LBN; 12×6OU; 4×6EU; 2×NA; | |||
| Cryo-EM structure of full-length TRPV1 with capsaicin at 48 degrees Celsius, in an intermediate sta… | homo-4-mer | 100.0 | 8×LBN; 12×6OU; 4×4DY; | |||
| Cryo-EM structure of full-length TRPV1 with capsaicin at 48 degrees Celsius, in an open state, clas… | homo-4-mer | 100.0 | 4×LBN; 4×6OU; 4×4DY; | |||
| Cryo-EM structure of full-length TRPV1 at pH6b state | homo-4-mer | 100.0 | ||||
| Cryo-EM structure of RTX-bound full-length TRPV1 at pH 5.5 | homo-4-mer | 100.0 | 4×6EU; | |||
| Cryo-EM structure of full-length TRPV1 at 48 degrees Celsius | homo-4-mer | 100.0 | 24×6OU; 8×LBN; 4×YFP; 4×T7X; | |||
| Cryo-EM structure of RTX-bound full-length TRPV1 in C1 state | homo-4-mer | 100.0 | 4×6EU; | |||
| Cryo-EM structure of RTX-bound full-length TRPV1 in O1 state | homo-4-mer | 100.0 | 4×6EU; | |||
| Cryo-EM structure of RTX-bound full-length TRPV1 in C2 state | homo-4-mer | 100.0 | 4×6EU; 3×NA; | |||
| Structure of TRPV1 determined in lipid nanodisc | homo-4-mer | 100 | 4×6O8; 4×6ES; 16×6OE; | |||
| Structure of TRPV1 in complex with capsazepine, determined in lipid nanodisc | homo-4-mer | 100 | 4×6ET; | |||
| Structure of the capsaicin receptor, TRPV1, determined by single particle electron cryo-microscopy | homo-4-mer | 100 | ||||
| TRPV1 in nanodisc bound with 2 LPA molecules in neighboring monomers | homo-4-mer | 100.0 | 2×8IJ; 2×NA; 2×NKN; | |||
| TRPV1 in nanodisc bound with one LPA in one monomer | homo-4-mer | 100.0 | 3×8IJ; 1×NA; 1×NKN; | |||
| TRPV1 in nanodisc bound with 3 LPA molecules | homo-4-mer | 100 | 1×85R; 2×NA; 3×NKN; | |||
| TRPV1 in nanodisc bound with two LPA molecules in opposite monomers | homo-4-mer | 100.0 | 2×8IJ; 2×NA; 2×NKN; | |||
| Crystal structure of the ankyrin repeat domain of TRPV1 | monomer | 100.0 | 1×ATP; | |||
| Crystal Structure of the Ankyrin Repeat Domain of Trpv1 | monomer | 100 | 1×ATP; | |||
1 SWISS-MODEL model
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 7lqy.1.A | homo-4-mer | 0.76 | 20×POV; | 90.81 | ||