B3LK97 (B3LK97_YEAS1) Saccharomyces cerevisiae (strain RM11-1a) (Baker's yeast)
DNA polymerase alpha binding protein UniProtKBInterProInteractive Modelling
927 aa; Sequence (Fasta) ;
5 identical sequences: Saccharomyces cerevisiae: N1NWI5, Q01454, B5VTS1, A0A8H4BWA2; Saccharomyces boulardii: A0A0L8VH17
It is possible new templates exist for this target since these models were created.
Available Structures
21 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Ligands | ||
|---|---|---|---|---|---|---|
| S. cerevisiae replisome + Ctf4, bound by pol alpha. Complex engaged with a fork DNA substrate conta… |
Heteromer P10363; P13382; P20457; P24279; P25588; P29469; P29496; P30665; P38121; P38132; P40359; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q12146; Q12488; | 4×ANP; 4×MG; 4×ZN; | ||||
| Assess | ||||||
| Yeast replisome in state I |
Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q12146; Q12488; | 7×ZN; 2×ADP; 5×MG; 3×AGS; | ||||
| Assess | ||||||
| S. cerevisiae replisome + Ctf4, bound by pol alpha primase. Complex engaged with a fork DNA substra… |
Heteromer P10363; P13382; P20457; P24279; P25588; P29469; P29496; P30665; P38121; P38132; P40359; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q12146; Q12488; | 4×ANP; 4×MG; 4×ZN; | ||||
| Assess | ||||||
| Yeast replisome in state II |
Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488; | 7×ZN; 2×ADP; 5×MG; 3×AGS; | ||||
| Assess | ||||||
| Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to a stapled Sld5 CIP |
Heteromer Q01454; Q03406; | 1×GOL; | ||||
| Assess | ||||||
| Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Sld5 |
Heteromer Q01454; Q03406; | |||||
| Assess | ||||||
| Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Pol alpha. |
Heteromer P13382; Q01454; | |||||
| Assess | ||||||
| Crystal structure of the C-terminal region of yeast Ctf4 |
Heteromer Q01454; | |||||
| Assess | ||||||
| Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Dna2. |
Heteromer P38859; Q01454; | |||||
| Assess | ||||||
| Crystal structure of the carboxy-terminal domain of yeast Ctf4 bound to Tof2. |
Heteromer Q01454; Q02208; | |||||
| Assess | ||||||
| Structure of Ctf4 trimer in complex with two CMG helicases |
Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488; | 6×ATP; | ||||
| Assess | ||||||
| Structure of Ctf4 trimer in complex with three CMG helicases |
Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488; | 6×ATP; | ||||
| Assess | ||||||
| Structure of Ctf4 trimer in complex with one CMG helicase |
Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488; | |||||
| Assess | ||||||
| S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation II) |
Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P52286; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q08496; Q12488; | 2×ANP; 2×MG; 7×ZN; | ||||
| Assess | ||||||
| Cryo-EM structure of the CMG Fork Protection Complex at a replication fork - Conformation 1 |
Heteromer P24279; P29469; P29496; P30665; P38132; P40359; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q12146; Q12488; | 5×ZN; 3×ANP; 3×MG; | ||||
| Assess | ||||||
| S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation I) |
Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P52286; P53091; P53840; Q01454; Q03406; Q04659; Q08032; Q08496; Q12146; Q12488; | 3×ANP; 3×MG; 7×ZN; | ||||
| Assess | ||||||
| Yeast replisome in state IV |
Heteromer A0A6A5Q1S9; P24279; P24482; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488; | |||||
| Assess | ||||||
| Structure of yeast replisome associated with FACT and histone hexamer, Composite map |
Heteromer A0A6A5Q1S9; A0A6A5Q536; A0A8H4BTB2; P02294; P02309; P04911; P21951; P24279; P24482; P25588; P29496; P30665; P32558; P53091; P53840; Q01454; Q03406; Q04636; Q04659; Q08032; Q12146; Q12488; | 7×ZN; 5×ADP; | ||||
| Assess | ||||||
| Yeast replisome in state III |
Heteromer P21951; P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488; | 7×ZN; 2×ADP; 4×MG; 2×AGS; | ||||
| Assess | ||||||
| Yeast replisome in state V |
Heteromer P24279; P24482; P29469; P29496; P30665; P38132; P40359; P53091; Q01454; Q03406; Q08032; Q12146; Q12488; | 2×ADP; 4×MG; 5×ZN; 2×AGS; | ||||
| Assess | ||||||
| Crystal structure of the C-terminal region of yeast Ctf4, selenomethionine protein. | homo-3-mer | |||||
| Assess | ||||||
6 SWISS-MODEL models
| Template | Oligo-state | QMEANDisCo | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 6skl.1.L | monomer | 0.79 | 100.00 | |||
| Assess | ||||||
| 2ymu.1.A | monomer | 0.57 | 13.65 | |||
| Assess | ||||||
| 2ymu.1.A | monomer | 0.56 | 13.33 | |||
| Assess | ||||||
| 2ymu.1.A | monomer | 0.56 | 14.10 | |||
| Assess | ||||||
| 2ymu.1.A | monomer | 0.56 | 12.97 | |||
| Assess | ||||||
| 7n8b.74.A | monomer | 0.54 | 13.52 | |||
| Assess | ||||||