C4R4Y0 (C4R4Y0_KOMPG) Komagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)

DNA-directed RNA polymerase subunit UniProtKBInterProSTRINGInteractive Modelling

1743 aa; Sequence (Fasta) Identical sequences: Komagataella phaffii: F2QW17

Sequence Features

 67Zinc 1
 67Zinc 2
 67Zinc 3
 70Zinc 1
 70Zinc 2
 70Zinc 3
 77Zinc 1
 77Zinc 2
 80Zinc 1; via tele nitrogen
 80Zinc 2; via tele nitrogen
 107Zinc 4
 107Zinc 5
 110Zinc 4
 148Zinc 4
 167Zinc 5; via carbonyl oxygen
 168Zinc 4
 168Zinc 5
 482Magnesium
 484Magnesium
 486Magnesium
 12-341RNA polymerase Rpb1, domain 1
IPR007080PF04997
 343-508RNA polymerase, alpha subunit
IPR000722PF00623
 511-669RNA polymerase Rpb1, domain 3
IPR007066PF04983
 697-801RNA polymerase Rpb1, domain 4
IPR007083PF05000
 808-1399RNA polymerase Rpb1, domain 5
IPR007081PF04998
 874-1058RNA polymerase Rpb1, domain 6
IPR007075PF04992
 1143-1277RNA polymerase Rpb1, domain 7
IPR007073PF04990
 1527-1539RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1541-1553RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1554-1567RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1568-1581RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1582-1595RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1596-1609RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1610-1623RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1624-1637RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1638-1651RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1652-1665RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1666-1679RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1680-1693RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1694-1707RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1708-1721RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001
 1722-1735RNA polymerase II, heptapeptide repeat, eukaryotic
IPR000684PF05001

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1 Heteromer
A0A1B2JER8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; F2QUC3;
APC;ZN;MG;5xog2-1463
'RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of th... Heteromer
C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6j502-1463
'RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-5) of the nucle... Heteromer
C4QZ45; C4QZQ7; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; F2QTN1; P04908; P06899; P62805; P84243;
10×ZN;MG;6j4w2-1463
'RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucle... Heteromer
C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
10×ZN;MG;6j4x2-1463
'RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucle... Heteromer
C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
10×ZN;MG;6j4y2-1463
'RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of th... Heteromer
C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6j4z2-1463
RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the... Heteromer
C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
10×ZN;MG;6j512-1463
'RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucle... Heteromer
C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
10×ZN;MG;6ir92-1463
RNA Polymerase II elongation complex bound with Spt4/5 and TFIIS Heteromer
C4QWA8; C4QY79; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2R6; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1;
10×ZN;MG;5xon2-1463
RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome Heteromer
C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6a5o2-1457
RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome Heteromer
C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6a5p2-1457
'RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA (+1 ... Heteromer
C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6inq2-1457
RNA polymerase II elongation complex stalled at SHL(-2) of the nucleosome Heteromer
C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6a5r2-1457
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome Heteromer
C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6a5t2-1457
'RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA, til... Heteromer
C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6a5u2-1457
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA Heteromer
C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243;
ZN;MG;6a5l2-1457
RNA Polymerase II from Komagataella Pastoris (Type-2 crystal) Heteromer
C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QPE6;
ZN;5x506-1457
RNA Polymerase II from Komagataella Pastoris (Type-3 crystal) Heteromer
C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QPE6;
ZN;5x516-1453
RNA Polymerase II from Komagataella Pastoris (Type-1 crystal) Heteromer
C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QPE6;
ZN;5x4z6-1453