C4R4Y0 (C4R4Y0_KOMPG) Komagataella phaffii (strain GS115 / ATCC 20864) (Yeast) (Pichia pastoris)
DNA-directed RNA polymerase subunit UniProtKBInterProSTRINGInteractive Modelling
1743 aa; Sequence (Fasta) ;
1 identical sequence: Komagataella phaffii: F2QW17
It is possible new templates exist for this target since these models were created.
Available Structures
37 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1 |
Heteromer A0A1B2JER8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; F2QUC3; | 100.0 | 9×ZN; 1×MG; 1×APC; | |||
| RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleos… |
Heteromer C4QY79; C4QZ45; C4QZQ7; C4R009; C4R198; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; P04908; P06899; P62805; P68431; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleo… |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the n… |
Heteromer C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleoso… |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA Polymerase II elongation complex bound with Spt4/5 and TFIIS |
Heteromer C4QWA8; C4QY79; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2R6; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the n… |
Heteromer C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 9×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of… |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II transcribing a chromatosome (type I) |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P16403; P62805; P68431; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleoso… |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the n… |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II transcribing a chromatosome (type II) |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P16403; P62805; P68431; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-5) of the nucleoso… |
Heteromer C4QZ45; C4QZQ7; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; F2QTN1; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the … |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleoso… |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the … |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleoso… |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleoso… |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft |
Heteromer C4QWA8; C4QXY9; C4QY79; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R5R1; C4R7L2; C4R9A1; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA (+1 pos… |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex stalled at SHL(-2) of the nucleosome |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex stalled at SHL(-5) of the nucleosome |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA, tilt c… |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome |
Heteromer C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QMI1; F2QPE6; P04908; P06899; P62805; P84243; | 100.0 | 8×ZN; 1×MG; | |||
| Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex |
Heteromer C4QWA8; C4QXY9; C4QY79; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R5R1; C4R7L2; C4R9A1; | 100.0 | 8×ZN; 1×MG; | |||
| RNA polymerase II elongation complex transcribing a nucleosome (EC49B) |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QNN8; F2QPE6; F2QPX0; F2QQ42; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex transcribing a nucleosome (EC49) |
Heteromer C4QYQ8; C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QNN8; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex transcribing a nucleosome (EC58hex) |
Heteromer C4QYQ8; C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QNN8; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex transcribing a nucleosome (EC115) |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex transcribing a nucleosome (EC58oct) |
Heteromer C4QYQ8; C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QNN8; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex containing Spt4/5, Elf1, Spt6, Spn1 and Paf1C |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3Z5; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QPE6; F2QQ42; F2QX94; | 100.0 | 10×ZN; 1×MG; | |||
| RNA polymerase II elongation complex transcribing a nucleosome (EC42) |
Heteromer C4QZ45; C4QZQ7; C4R009; C4R0E6; C4R1E6; C4R1V1; C4R273; C4R2U9; C4R370; C4R3K1; C4R3P8; C4R3Z5; C4R6B2; C4R7H2; C4R7L2; C4R7L8; C4R997; C4R9A1; F2QMI1; F2QPE6; F2QQ42; P04908; P06899; P62805; P84243; | 100.0 | 10×ZN; 1×MG; | |||
| RNA Polymerase II from Komagataella Pastoris (Type-2 crystal) |
Heteromer C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QPE6; | 100.0 | 8×ZN; | |||
| RNA Polymerase II from Komagataella Pastoris (Type-3 crystal) |
Heteromer C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QPE6; | 100.0 | 8×ZN; | |||
| RNA Polymerase II from Komagataella Pastoris (Type-1 crystal) |
Heteromer C4QWA8; C4QZQ7; C4R009; C4R1V1; C4R273; C4R2U9; C4R3P8; C4R3Z5; C4R7L2; C4R9A1; F2QPE6; | 100.0 | 8×ZN; | |||
3 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 3hoy.1.A | monomer | 0.75 | 2×ZN; | 73.19 | ||
| 5x51.1.A | monomer | 0.74 | 2×ZN; | 100.00 | ||
| 6gmh.1.A | monomer | 0.69 | 1×ZN; | 55.07 | ||