N1P8D2 | SWISS-MODEL Repository

N1P8D2 (N1P8D2_YEASC) Saccharomyces cerevisiae (strain CENPK113-7D) (Baker's yeast)

RuvB-like helicase UniProtKB InterPro Interactive Modelling

463 aa; Sequence (Fasta) ; 7 identical sequences: Saccharomyces cerevisiae: G2WAT9, C7GN07, Q03940, B5VG84, A6ZYE9, B3LG93; Saccharomyces pastorianus: A0A6C1DPF6

It is possible new templates exist for this target since these models were created.

Available Structures

21 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Class2 of the INO80-Nucleosome complex	8euf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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Chromatin remodeller-nucleosome complex at 3.6 A resolution.	6gej PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P02309; P04911; P61830; Q03433; Q03940; Q05471; Q12464; Q12509;	21-463	100	8×ADP; 2×BEF; 8×MG; 2×ZN;
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Class1 of the INO80-Hexasome complex	8ets PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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Class2 of the INO80-Hexasome complex	8etu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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SWR1-nucleosome complex in configuration 2	8qkv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P02309; P04912; P61830; Q03388; Q03433; Q03940; Q05471; Q12464; Q12509;	21-463	100	8×ADP; 2×BEF; 8×MG; 2×ZN;
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SWR1-hexasome complex	8qyv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P02309; P04911; P38326; P61830; Q03388; Q03433; Q03940; Q05471; Q12464; Q12509;	21-463	100.0	8×ADP; 2×BEF; 8×MG; 2×ZN;
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SWR1 lacking Swc5 subunit in complex with hexasome	9fbw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P02309; P04911; P61830; Q03388; Q03433; Q03940; Q05471; Q12464; Q12509;	21-463	100.0	8×ADP; 2×BEF; 8×MG; 2×ZN;
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Class3 of INO80-Hexasome complex	8etw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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Class1 of the INO80-Nucleosome complex	8eu9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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Chromatin remodeller-nucleosome complex at 4.5 A resolution.	6gen PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P02309; P04911; P61830; Q03433; Q03940; Q05471; Q12464; Q12509;	21-463	100	8×ADP; 2×BEF; 8×MG; 2×ZN;
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SWR1-nucleosome complex in configuration 1	8qku PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P02309; P04912; P61830; Q03388; Q03433; Q03940; Q05471; Q12464; Q12509;	21-463	100	8×ADP; 2×BEF; 8×MG; 2×ZN;
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DeltaNhp10 INO80 bound to S.c 0/40 nucleosome, INO80 core module	9ccd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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S.c INO80 in complex with S.c 0/80 nucleosome	9c9g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P04911; P32617; P40154; P53115; P53946; P61830; P62799; Q03940; Q12464;	21-463	100.0	6×ADP;
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S.c INO80 in complex with S.c 0/40 nucleosome, Class 2	9c9t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P04911; P32617; P40154; P53115; P53946; P61830; P62799; Q03940; Q12464;	21-463	100.0	6×ADP;
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DeltaArp8 INO80 bound to S.c 0/40 nucleosome, INO80 Core Module	9cat PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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S.c INO80 in complex with Xenopus 0/80 nucleosome, INO80 Core	9c9z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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S.c INO80 in complex with Xenopus 0/40 nucleosome	9can PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A310TTQ1; A0A8J1LTD2; P02281; P06897; P32617; P40154; P53115; P53946; Q03940; Q12464;	21-463	100.0	6×ADP;
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S.c INO80 in complex with S.c 0/40 nucleosome, Class 1	9c9s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P04911; P32617; P40154; P53115; P53946; P61830; P62799; Q03940; Q12464;	21-463	100.0	6×ADP;
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SWR1-hexasome-dimer complex	8qz0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02293; P02309; P04911; P38326; P40019; P61830; Q03388; Q03433; Q03940; Q05471; Q12464; Q12509; Q12692;	22-463	100.0	8×ADP; 2×BEF; 8×MG; 2×ZN;
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Cryo-EM structure of native SWR1 bound to DNA (composite structure)	9b1d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q03388; Q03433; Q03940; Q05471; Q12464; Q12509;	21-457	100.0	4×AGS; 8×MG; 2×ZN; 4×ADP;
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Cryo-EM structure of native SWR1 bound to nucleosome (composite structure)	9b1e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0B4KFZ9; P02293; P02299; P04911; P31376; Q03388; Q03433; Q03940; Q05471; Q12464; Q12509;	21-457	100.0	8×ADP; 2×BEF; 8×MG; 2×ZN;
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2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
8qyv.1.M	monomer	0.77	21-462	100.00
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2c9o.1.F	homo-6-mer	0.71	18-458	68.65
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

N1P8D2 (N1P8D2_YEASC) Saccharomyces cerevisiae (strain CENPK113-7D) (Baker's yeast)

RuvB-like helicase UniProtKBInterProInteractive Modelling

Available Structures

21 Experimental Structures

2 SWISS-MODEL models

Alignments

Background

Resolution

RuvB-like helicase UniProtKB InterPro Interactive Modelling