O76083 | SWISS-MODEL Repository

O76083 (PDE9A_HUMAN) Homo sapiens (Human)

High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A UniProtKB InterPro STRING Interactive Modelling

593 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5; Isoform 6; Isoform 7; Isoform 8; Isoform 9; Isoform 10; Isoform 11; Isoform 12; Isoform 13; Isoform 14; Isoform 15; Isoform 16); 1 identical sequence: Homo sapiens: A0A0S2Z4T6

Available Structures

25 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of PDE9 in complex with racemic inhibitor C33	4y86 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	241-566	100	1×49D; 2×ZN; 2×MG; 1×49E;
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Crystal structure of the PDE9A catalytic domain in complex with inhibitor 28	4gh6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	241-566	100	3×LUO; 2×ZN; 2×MG;
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Crystal structure of phosphodiesterase 9 in complex with (S)-C33	4y8c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	241-566	100	2×49D; 2×ZN; 2×MG;
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Crystal structure of PDE9A (E406A) mutant in complex with IBMX	3n3z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	241-566	99.69	2×IBM; 2×ZN; 2×MG; 1×CL;
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Crystal structure of the human Phosphodiesterase 9A catalytic domain complexed with IBMX	2yy2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	241-566	100	2×ZN; 2×MG; 2×IBM;
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Crystal structure of phosphodiesterase 9 in complex with (R)-C33 (6-{[(1R)-1-(4-chlorophenyl)ethyl]…	4y87 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	241-566	100	2×49E; 2×ZN; 2×MG;
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Crystal structure of PDE9A(Q453E) in complex with inhibitor BAY73-6691	3qi3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	241-565	99.69	2×PDB; 2×ZN; 2×MG;
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Crystal structure of PDE9A(Q453E) in complex with IBMX	3qi4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	241-565	99.69	2×IBM; 2×ZN; 2×MG;
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Human PDE9 in complex with selective inhibitor	3jsw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	242-565	100	2×ZN; 2×MG; 2×JAR;
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human phosphodiestrase-5'GMP complex (EP), produced by soaking with 20mM cGMP+20 mM MnCl2+20 mM MgC…	3dys PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	242-565	100	4×MN; 2×MG; 1×5GP; 1×IBM; 1×FMT;
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human phosphodiestrase 9 (inhibited by omitting divalent cation) in complex with cGMP	3dyq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	242-565	100	4×NA; 1×PCG; 1×IBM;
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Crystal structure of the PDE9 catalytic domain in complex with inhibitor 2	6a3n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	245-566	100	2×ZN; 2×MG; 2×9Q9;
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Crystal structure of the PDE9 catalytic domain in complex with inhibitor 4a	6lzz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	246-566	100	2×ZN; 2×MG; 2×EZU;
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Crystal structure of the PDE9A catalytic domain in complex with (S)-BAY73-6691	3k3h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	246-566	100	2×ZN; 2×MG; 2×BYE;
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Crystal structure of the PDE9A catalytic domain in complex with (R)-BAY73-6691	3k3e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	247-566	100	2×ZN; 2×MG; 2×PDB;
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X-RAY STRUCTURE OF PDE9A IN COMPLEX WITH Inhibitor 13A	8bpy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	247-561	100	2×ZN; 2×MG; 2×NA; 1×R4I;
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Crystal structure of PDE9 in complex with IBMX	2hd1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	241-566	100	1×ZN; 1×MG; 1×IBM;
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human phosphodiestrase 9 in complex with cGMP (Zn inhibited)	3dyn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	242-565	100	1×ZN; 1×MG; 1×PCG;
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Human Phosphodiesterase 9 in complex with product 5'-GMP (E+P complex)	3dy8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	242-565	100	1×MN; 1×MG; 1×5GP;
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Human pde9 in complex with selective compound	4g2j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	242-565	100	1×ZN; 1×MG; 1×0WF;
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Human phosphodiesterase 9 in complex with inhibitors	4e90 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	242-565	100	1×ZN; 1×MG; 1×7RG;
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human phosphdiesterase 9 substrate complex (ES complex)	3dyl PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	242-565	100	1×MN; 1×MG; 1×PCG;
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Human phosphodiesterase 9 in complex with inhibitor	3jsi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	242-565	100	1×ZN; 1×MG; 1×WTC;
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Human PDE9 in complex with selective compound	4g2l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	242-565	100	1×ZN; 1×MG; 1×0WL;
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phosphodiesterase-9A in complex with inhibitor 4b	7f0i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	247-562	100	1×ZN; 1×MG; 1×06A;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	4y86.1.A	homo-2-mer	0.91	241-566	1×49D; 2×ZN; 1×MG; 1×49E;	94.18
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

15 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	4y86.1.A	homo-2-mer	0.91	181-506	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 3	4y86.1.A	homo-2-mer	0.91	114-439	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 4	4y86.1.A	homo-2-mer	0.91	113-438	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 5	4y86.1.A	homo-2-mer	0.91	188-513	1×49D; 2×ZN; 1×MG; 1×49E;	95.28
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Isoform 6	4y86.1.A	homo-2-mer	0.91	140-465	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 7	4y86.1.A	homo-2-mer	0.92	34-359	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 8	4y86.1.A	homo-2-mer	0.91	155-480	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 9	4y86.1.A	homo-2-mer	0.92	81-406	1×49D; 2×ZN; 1×MG; 1×49E;	99.31
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Isoform 10	4y86.1.A	homo-2-mer	0.92	24-349	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 11	4y86.1.A	homo-2-mer	0.91	107-432	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 12	4y86.1.A	homo-2-mer	0.91	139-464	1×49D; 2×ZN; 1×MG; 1×49E;	91.45
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Isoform 13	4y86.1.A	homo-2-mer	0.91	174-499	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 14	4y86.1.A	homo-2-mer	0.91	200-525	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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Isoform 15	4y86.1.A	homo-2-mer	0.91	215-540	1×49D; 2×ZN; 1×MG; 1×49E;	93.62
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Isoform 16	4y86.1.A	homo-2-mer	0.91	133-458	1×49D; 2×ZN; 1×MG; 1×49E;	100.00
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O76083 (PDE9A_HUMAN) Homo sapiens (Human)

High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A UniProtKBInterProSTRINGInteractive Modelling

Available Structures

25 Experimental Structures

1 SWISS-MODEL model

15 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A UniProtKB InterPro STRING Interactive Modelling