P03347 (GAG_HV1B1) Human immunodeficiency virus type 1 group M subtype B (isolate BH10)(HIV-1)

Gag polyprotein UniProtKBInterProInteractive Modelling

512 aa; Sequence (Fasta)

Sequence Features

 297V -> L (in strain: Isolate PV22).
 390-407CCHC-type 1.
 411-428CCHC-type 2.
 132-133Cleavage; by viral protease.
 363-364Cleavage; by viral protease.
 377-378Cleavage; by viral protease.
 432-433Cleavage; by viral protease.
 448-449Cleavage; by viral protease.
 2-132Immunodeficiency lentiviral matrix, N-te rminal
IPR000071PF00540
 149-363Retroviral nucleocapsid protein Gag
IPR000721PF00607
 391-406Zinc finger, CCHC-type
IPR001878PF00098
 412-428Zinc finger, CCHC-type
IPR001878PF00098
 461-498Gag protein p6
IPR014817PF08705

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
HIV-1 immature CTD-SP1 hexamer in complex with IP6homo-6-mer IHP;6bhr280-370
HIV-1 capsid C-terminal domain in complex with an inhibitor of particle assemblymonomer ACY;2buo279-363

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
monomer ZN;-2.951q3y.1.A390-430
97.56
monomer ZN;DC;-1.332l4l.1.A388-432
97.78
monomer -0.341u57.1.A343-390
95.83
monomer -0.302m8l.1.B133-353
98.27
monomer -0.742m8n.1.A133-353
98.27
monomer 0.036mqo.1.A133-353
97.84
monomer -2.761l6n.1.A2-283
96.11