P03356 (POL_MLVAV) AKV murine leukemia virus (AKR (endogenous) murine leukemia virus)

Gag-Pol polyprotein UniProtKBInterProInteractive Modelling

1734 aa; Sequence (Fasta)

Molecule Processing
Matrix protein p15
RNA-binding phosphoprotein p12
Capsid protein p30
Nucleocapsid protein p10-Pol
Protease
Reverse transcriptase/ribonuclease H
Integrase

Sequence Features

 565Protease; shared with dimeric partner
 808Magnesium; catalytic; for reverse transcriptase activity
 882Magnesium; catalytic; for reverse transcriptase activity
 883Magnesium; catalytic; for reverse transcriptase activity
 1182Magnesium; catalytic; for RNase H activity
 1220Magnesium; catalytic; for RNase H activity
 1241Magnesium; catalytic; for RNase H activity
 1311Magnesium
 1454Magnesium; catalytic; for integrase activity
 1513Magnesium; catalytic; for integrase activity
 501-518CCHC-type
 1386-1426HHCC-type
 129-130Cleavage; by viral protease
 214-215Cleavage; by viral protease
 477-478Cleavage; by viral protease
 533-534Cleavage; by viral protease
 658-659Cleavage; by viral protease
 1329-1330Cleavage; by viral protease
 2-124Gamma-retroviral matrix protein
IPR000840PF01140
 130-214Gag polyprotein, inner coat protein p12
IPR002079PF01141
 225-432Core shell protein Gag P30
IPR003036PF02093
 502-518Zinc finger, CCHC-type
IPR001878PF00098
 548-639Retropepsins
IPR018061PF00077
 759-929Reverse transcriptase domain
IPR000477PF00078
 994-1090Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR041577PF17919
 1176-1318Ribonuclease H domain
IPR002156PF00075
 1340-1438Gag-Pol polyprotein, Zinc-finger like domain
IPR039464PF16721
 1445-1542Integrase, catalytic core
IPR001584PF00665
 1653-1731Murine leukemia virus integrase, C-terminal
IPR040643PF18697

Sequence Alignments

Capsid protein p30 215-477; PRO_0000442889

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -0.116hwy.1.B215-431
98.62

Reverse transcriptase/ribonuclease H 659-1329; PRO_0000259723

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -2.575dmq.1.A682-1321
95.99

Integrase 1330-1734; PRO_0000259724

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -2.014bac.1.A1361-1710
26.35
monomer -2.483oym.1.B1442-1636
26.73