P0C6U4 (R1A_CVHN2) Human coronavirus HKU1 (isolate N2) (HCoV-HKU1)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

4441 aa; Sequence (Fasta)

Molecule Processing
Non-structural protein 1
Non-structural protein 2
Non-structural protein 3
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
Non-structural protein 11

Sequence Features

Add
 1131For PL1-PRO activity
 1282For PL1-PRO activity
 1727For PL2-PRO activity
 1884For PL2-PRO activity
 3345For 3CL-PRO activity
 3449For 3CL-PRO activity
 4364Zinc 1
 4367Zinc 1
 4373Zinc 1
 4380Zinc 1
 4406Zinc 2
 4409Zinc 2
 4417Zinc 2
 4419Zinc 2
 2196-2216Helical
 2257-2277Helical
 2288-2308Helical
 2371-2391Helical
 2413-2433Helical
 2814-2834Helical
 3089-3109Helical
 3121-3141Helical
 3148-3168Helical
 3173-3193Helical
 3621-3641Helical
 3646-3666Helical
 3671-3691Helical
 3714-3734Helical
 3742-3762Helical
 3770-3790Helical
 3813-3833Helical
 1208-1236C4-type 1
 1805-1841C4-type 2
 4364-4380
 4406-4419
 222-223Cleavage; by PL1-PRO
 809-810Cleavage; by PL1-PRO
 2808-2809Cleavage; by PL2-PRO
 3304-3305Cleavage; by 3CL-PRO
 3607-3608Cleavage; by 3CL-PRO
 3894-3895Cleavage; by 3CL-PRO
 3986-3987Cleavage; by 3CL-PRO
 4180-4181Cleavage; by 3CL-PRO
 4290-4291Cleavage; by 3CL-PRO
 4427-4428Cleavage; by 3CL-PRO
 1-330Betacoronavirus NSP1
IPR022570PF11963
 646-809Non-structural protein 2, C-terminal domain, coronavirus
IPR043613PF19212
 1094-1342Peptidase C30/C16, Betacoronavirus
IPR002705PF01831
 1354-1458Macro domain
IPR002589PF01661
 1619-1921Peptidase C16, coronavirus
IPR013016PF08715
 1956-2072Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus
IPR032592PF16251
 2308-2793Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2830-3186Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 3215-3302Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 3333-3620Peptidase C30, coronavirus
IPR008740PF05409
 3635-3894Non-structural protein 6, coronavirus
IPR043610PF19213
 3895-3983Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3984-4174Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 4181-4290Non-structural protein NSP9, coronavirus
IPR014822PF08710
 4299-4419RNA synthesis protein NSP10, coronavirus
IPR018995PF09401

Sequence Alignments

Non-structural protein 3 810-2808; PRO_0000338209

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.044ypt.1.A1544-1921
64.25
Assess

3C-like proteinase 3305-3607; PRO_0000338211

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer 02J;-1.223d23.1.A3305-3604
98.67
Assess