P0C6U5 (R1A_CVHN5) Human coronavirus HKU1 (isolate N5) (HCoV-HKU1)
Replicase polyprotein 1a UniProtKBInterProInteractive Modelling
4421 aa; Sequence (Fasta)
Molecule Processing
| Non-structural protein 1 | |
| Non-structural protein 2 | |
| Non-structural protein 3 | |
| Non-structural protein 4 | |
| 3C-like proteinase | |
| Non-structural protein 6 | |
| Non-structural protein 7 | |
| Non-structural protein 8 | |
| Non-structural protein 9 | |
| Non-structural protein 10 | |
| Non-structural protein 11 |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1111 | For PL1-PRO activity | ||
| 1262 | For PL1-PRO activity | ||
| 1707 | For PL2-PRO activity | ||
| 1864 | For PL2-PRO activity | ||
| 3325 | For 3CL-PRO activity | ||
| 3429 | For 3CL-PRO activity | ||
| 2176-2196 | Helical | ||
| 2237-2257 | Helical | ||
| 2268-2288 | Helical | ||
| 2351-2371 | Helical | ||
| 2393-2413 | Helical | ||
| 2794-2814 | Helical | ||
| 3069-3089 | Helical | ||
| 3101-3121 | Helical | ||
| 3128-3148 | Helical | ||
| 3153-3173 | Helical | ||
| 3601-3621 | Helical | ||
| 3626-3646 | Helical | ||
| 3651-3671 | Helical | ||
| 3694-3714 | Helical | ||
| 3722-3742 | Helical | ||
| 3750-3770 | Helical | ||
| 3793-3813 | Helical | ||
| 1188-1216 | C4-type 1 | ||
| 1785-1821 | C4-type 2 | ||
| 4344-4360 | |||
| 4386-4399 | |||
| 222-223 | Cleavage; by PL1-PRO | ||
| 809-810 | Cleavage; by PL1-PRO | ||
| 2788-2789 | Cleavage; by PL2-PRO | ||
| 3284-3285 | Cleavage; by 3CL-PRO | ||
| 3587-3588 | Cleavage; by 3CL-PRO | ||
| 3874-3875 | Cleavage; by 3CL-PRO | ||
| 3966-3967 | Cleavage; by 3CL-PRO | ||
| 4160-4161 | Cleavage; by 3CL-PRO | ||
| 4270-4271 | Cleavage; by 3CL-PRO | ||
| 4407-4408 | Cleavage; by 3CL-PRO | ||
| 1-330 | Betacoronavirus NSP1 IPR022570PF11963 | ||
| 646-808 | Non-structural protein 2, C-terminal domain, coronavirus IPR043613PF19212 | ||
| 1074-1322 | Peptidase C30/C16, Betacoronavirus IPR002705PF01831 | ||
| 1334-1438 | Macro domain IPR002589PF01661 | ||
| 1599-1901 | Peptidase C16, coronavirus IPR013016PF08715 | ||
| 1936-2052 | Non-structural protein NSP3, nucleic acid-binding (NAR) domain, betacoronavirus IPR032592PF16251 | ||
| 2288-2773 | Coronavirus replicase NSP3, C-terminal IPR043611PF19218 | ||
| 2810-3166 | Coronavirus replicase NSP4, N-terminal IPR043612PF19217 | ||
| 3195-3282 | Non-structural protein NSP4, C-terminal, coronavirus IPR032505PF16348 | ||
| 3313-3600 | Peptidase C30, coronavirus IPR008740PF05409 | ||
| 3615-3874 | Non-structural protein 6, coronavirus IPR043610PF19213 | ||
| 3875-3963 | Non-structural protein NSP7, coronavirus IPR014828PF08716 | ||
| 3964-4154 | Non-structural protein NSP8, coronavirus-like IPR014829PF08717 | ||
| 4161-4270 | Non-structural protein NSP9, coronavirus IPR014822PF08710 | ||
| 4279-4399 | RNA synthesis protein NSP10, coronavirus IPR018995PF09401 |
Sequence Alignments
Non-structural protein 3 810-2788; PRO_0000338221
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 1×ZN; | -1.21 | 4ypt.1.A | 64.25 | |
| Assess | |||||
3C-like proteinase 3285-3587; PRO_0000338223
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| homo-2-mer | 2×02J; | -0.12 | 6jij.1.A | 86.38 | |
| Assess | |||||