P0C6V4 (R1A_IBVBC) Avian infectious bronchitis virus (strain Beaudette CK) (IBV)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

3951 aa; Sequence (Fasta) Identical sequences: Avian infectious bronchitis virus: P0C6V3

Molecule Processing
Non-structural protein 2
Non-structural protein 3
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
Non-structural protein 11

Sequence Features

Add
 1274For PL-PRO activity
 1437For PL-PRO activity
 2820For 3CL-PRO activity
 2922For 3CL-PRO activity
 3858Zinc 1
 3861Zinc 1
 3867Zinc 1
 3878Zinc 1
 3904Zinc 2
 3907Zinc 2
 3915Zinc 2
 3917Zinc 2
 1721-1741Helical
 1751-1771Helical
 1844-1864Helical
 1869-1888Helical
 2281-2301Helical
 2560-2580Helical
 2589-2609Helical
 2612-2632Helical
 2644-2664Helical
 3101-3121Helical
 3122-3142Helical
 3152-3172Helical
 3189-3209Helical
 3220-3240Helical
 3258-3278Helical
 3297-3317Helical
 1353-1390C4-type
 3858-3878
 3904-3917
 673-674Cleavage; by PL-PRO
 2265-2266Cleavage; by PL-PRO
 2779-2780Cleavage; by 3CL-PRO
 3086-3087Cleavage; by 3CL-PRO
 3379-3380Cleavage; by 3CL-PRO
 3462-3463Cleavage; by 3CL-PRO
 3672-3673Cleavage; by 3CL-PRO
 3783-3784Cleavage; by 3CL-PRO
 3928-3929Cleavage; by 3CL-PRO
 14-371Non-structural protein 2, gammacoronavirus
IPR040795PF17896
 1040-1145Macro domain
IPR002589PF01661
 1174-1482Peptidase C16, coronavirus
IPR013016PF08715
 1783-2248Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2305-2656Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 2684-2776Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 2808-3096Peptidase C30, coronavirus
IPR008740PF05409
 3113-3379Non-structural protein 6, coronavirus
IPR043610PF19213
 3381-3462Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3463-3667Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 3673-3783Non-structural protein NSP9, coronavirus
IPR014822PF08710
 3796-3918RNA synthesis protein NSP10, coronavirus
IPR018995PF09401

Sequence Alignments

Non-structural protein 2 1-673; PRO_0000338326

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -2.803ld1.1.A14-371
92.74
Assess

Non-structural protein 3 674-2265; PRO_0000338327

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.034x2z.1.A1177-1477
100.00
Assess

3C-like proteinase 2780-3086; PRO_0000338329

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
homo-2-mer 02J;0.502q6f.1.A2780-3081
94.48
Assess