P0C6V5 (R1A_IBVM) Avian infectious bronchitis virus (strain M41) (IBV)

Replicase polyprotein 1a UniProtKBInterProInteractive Modelling

3953 aa; Sequence (Fasta)

Molecule Processing
Non-structural protein 2
Non-structural protein 3
Non-structural protein 4
3C-like proteinase
Non-structural protein 6
Non-structural protein 7
Non-structural protein 8
Non-structural protein 9
Non-structural protein 10
Non-structural protein 11

Sequence Features

Add
 1276For PL-PRO activity
 1439For PL-PRO activity
 2822For 3CL-PRO activity
 2924For 3CL-PRO activity
 807L -> S
 1618S -> F
 1739S -> A
 2631M -> L
 2774S -> P
 1723-1743Helical
 1753-1773Helical
 1846-1866Helical
 1889-1909Helical
 2283-2303Helical
 2373-2393Helical
 2562-2582Helical
 2591-2611Helical
 2614-2634Helical
 2646-2666Helical
 3103-3123Helical
 3124-3144Helical
 3154-3174Helical
 3191-3211Helical
 3222-3242Helical
 3260-3280Helical
 3299-3319Helical
 1355-1392C4-type
 3860-3880
 3906-3919
 673-674Cleavage; by PL-PRO
 2267-2268Cleavage; by PL-PRO
 2781-2782Cleavage; by 3CL-PRO
 3088-3089Cleavage; by 3CL-PRO
 3381-3382Cleavage; by 3CL-PRO
 3464-3465Cleavage; by 3CL-PRO
 3674-3675Cleavage; by 3CL-PRO
 3785-3786Cleavage; by 3CL-PRO
 3930-3931Cleavage; by 3CL-PRO
 14-371Non-structural protein 2, gammacoronavirus
IPR040795PF17896
 1042-1147Macro domain
IPR002589PF01661
 1176-1477Peptidase C16, coronavirus
IPR013016PF08715
 1785-2250Coronavirus replicase NSP3, C-terminal
IPR043611PF19218
 2306-2658Coronavirus replicase NSP4, N-terminal
IPR043612PF19217
 2686-2778Non-structural protein NSP4, C-terminal, coronavirus
IPR032505PF16348
 2810-3098Peptidase C30, coronavirus
IPR008740PF05409
 3115-3381Non-structural protein 6, coronavirus
IPR043610PF19213
 3382-3464Non-structural protein NSP7, coronavirus
IPR014828PF08716
 3465-3667Non-structural protein NSP8, coronavirus-like
IPR014829PF08717
 3675-3785Non-structural protein NSP9, coronavirus
IPR014822PF08710
 3798-3920RNA synthesis protein NSP10, coronavirus
IPR018995PF09401

Sequence Alignments

Non-structural protein 2 1-673; PRO_0000338337

DescriptionOligo-stateLigandsStructureRange
Crystal Structure of IBV Nsp2amonomer 3ld1 13-371
Assess

Non-structural protein 3 674-2267; PRO_0000338338

DescriptionOligo-stateLigandsStructureRange
IBV Nsp3 ADRP domainhomo-2-mer 3ewo 1005-1178
Assess
complex of substrate ADP-ribose with IBV Nsp3 ADRP domainhomo-2-mer APR;3ewp 1005-1178
Assess
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.014x2z.1.A1179-1479
89.03
Assess

3C-like proteinase 2782-3088; PRO_0000338340

DescriptionOligo-stateLigandsStructureRange
Crystal structure of infectious bronchitis virus (IBV) main protease in complex with a Michael acce…homo-2-mer 2q6f 2782-3083
Assess
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -1.162q6d.1.B2782-3087
99.67
Assess