P11388 | SWISS-MODEL Repository

P11388 (TOP2A_HUMAN) Homo sapiens (Human)

DNA topoisomerase 2-alpha UniProtKB InterPro STRING Interactive Modelling

1531 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4)

It is possible new templates exist for this target since these models were created.

Available Structures

15 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated TOP2A pepti…	5nne PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O60885;	1198-1207	100	1×EDO;
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Cryo-EM structure of the entire Human topoisomerase II alpha in State 1	6zy7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-1215	100.0	2×ANP; 2×EVP;
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Cryo-EM structure of the entire Human topoisomerase II alpha in State 2	6zy8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-1215	100.0	2×ANP; 2×EVP;
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Cryo-EM structure of the Human topoisomerase II alpha DNA-binding/cleavage domain in State 2	6zy6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	433-1215	100.0	2×EVP;
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Cryo-EM structure of the Human topoisomerase II alpha DNA-binding/cleavage domain in State 1	6zy5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	433-1215	100.0	2×EVP;
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Human topoisomerase II alpha bound to DNA	4fm9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	433-1190	100.0	4×MG; 2×GOL;
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Crystal structure of DNA binding and cleavage core of human topoisomerase 2-alpha in a DNA binding-…	8w50 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	433-1188	100.0	3×SO4;
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Human topoisomerase IIalpha in complex with DNA and etoposide	5gwk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	436-1187	100.0	6×MG; 2×EVP;
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Re-refined Human DNA topoisomerase IIa (ATPase and transducer domains) in complex with ADP and SO4	4r1f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-424	100.0	2×MG; 2×ADP; 1×GOL; 1×SO4;
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Human DNA topoisomerase IIa ATPase/ADP	1zxn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-424	100.0	2×MG; 2×ADP; 1×GOL; 1×SO4;
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Human Topoisomerase 2 Alpha ATPase domain bound to non-hydrolyzable ATP analog AMPPNP	9bq6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-418	100.0	2×ANP; 2×MG;
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Human Topoisomerase 2 Alpha ATPase domain bound to topobexin and non-hydrolyzable ATP analog AMPPNP	9bqb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-417	100.0	2×ANP; 2×MG; 2×A1ASC; 2×CL; 1×GOL;
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Human Topoisomerase 2 Alpha ATPase domain bound to obex 5c and non-hydrolyzable ATP analog AMPPNP	9bq9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-417	100.0	2×ANP; 2×MG; 2×A1ASE; 1×GOL; 2×CL;
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Human Topoisomerase 2 Alpha ATPase domain bound to BNS22 and non-hydrolyzable ATP analog AMPPNP	9bq7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-417	100.0	2×ANP; 2×MG; 2×A1ASD; 2×CL; 1×GOL;
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Human Topo IIa ATPase/AMP-PNP	1zxm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	29-411	100.0	2×MG; 2×ANP;
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5 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
8ke7.1.A	homo-2-mer	0.79	433-1188	79.92
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6zy5.1.A	homo-2-mer	0.75	433-1215	100.00
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9ggq.1.D	monomer	0.56	32-671	23.97
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6gav.1.A	homo-2-mer	0.55	42-1184	22.14
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8qqs.1.D	monomer	0.55	35-671	23.84
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

14 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	8ke7.1.A	homo-2-mer	0.79	459-1214		79.92
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Isoform 2	6zy5.1.A	homo-2-mer	0.75	459-1241		99.87
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Isoform 2	9ggq.1.D	monomer	0.55	32-697		24.38
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Isoform 2	6gav.1.A	homo-2-mer	0.55	42-1211		22.46
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Isoform 2	8qqs.1.D	monomer	0.53	35-697		24.42
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Isoform 3	8ke7.1.A	homo-2-mer	0.79	469-1224		79.92
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Isoform 3	6zy5.1.A	homo-2-mer	0.75	469-1251		100.00
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Isoform 3	9ggq.1.D	monomer	0.54	32-707		24.13
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Isoform 3	2xct.2.A	homo-2-mer	0.54	476-1214	1×MN;	25.55
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Isoform 3	8qqs.1.D	monomer	0.52	35-707		24.17
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Isoform 4	8ke7.1.A	homo-2-mer	0.79	514-1269		79.92
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Isoform 4	6zy5.1.A	homo-2-mer	0.74	514-1296		99.92
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Isoform 4	9ggq.1.D	monomer	0.52	32-752		23.85
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Isoform 4	8qqs.1.D	monomer	0.51	35-752		23.89
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P11388 (TOP2A_HUMAN) Homo sapiens (Human)

DNA topoisomerase 2-alpha UniProtKBInterProSTRINGInteractive Modelling

Available Structures

15 Experimental Structures

5 SWISS-MODEL models

14 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

DNA topoisomerase 2-alpha UniProtKB InterPro STRING Interactive Modelling