P18177 (TCDB_CLODI) Clostridioides difficile (Peptoclostridium difficile)
Toxin B UniProtKBInterProInteractive Modelling
It is possible new templates exist for this target since these models were created.
Available Structures
30 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Full-length TcdB and CSPG4 (401-560) complex |
Heteromer Q6UVK1; | 100 | ||||
| TcdB and frizzled-2 CRD complex |
Heteromer Q14332; | 100 | ||||
| State 2 of TcdB and FZD2 at pH5 |
Heteromer Q14332; | 100.0 | ||||
| state 1 of TcdB and FZD2 at pH5 |
Heteromer Q14332; | 100.0 | ||||
| cryo-EM structure complex of Frizzled-7 and Clostridioides difficile toxin B |
Heteromer O75084; | 100.0 | 1×ZN; | |||
| Clostridioides difficile toxinB with DLD-4 darpin |
Heteromer | 100 | ||||
| TcdB1 in complex with mini-binder |
Heteromer | 100.0 | 1×ZN; | |||
| Structural basis for CSPG4 as a receptor for TcdB and a therapeutic target in Clostridioides diffic… |
Heteromer Q6UVK1; | 99.67 | 1×ZN; | |||
| Partial C. difficile TcdB and CSPG4 fragment |
Heteromer Q6UVK1; | 100.0 | ||||
| Structure of the GTD domain of Clostridium difficile toxin B in complex with VHH 7F |
Heteromer | 100 | ||||
| Novel structural insights for a pair of monoclonal antibodies recognizing non-overlapping epitopes … |
Heteromer | 100.0 | ||||
| Structures of TcdB in complex with Cdc42 |
Heteromer P60953; | 99.81 | 1×MN; 1×UDP; 11×SO4; 1×GDP; 1×MG; | |||
| Novel structural insights for a pair of monoclonal antibodies recognizing non-overlapping epitopes … |
Heteromer | 100.0 | ||||
| Structural basis for recognition of frizzled proteins by Clostridium difficile toxin B |
Heteromer Q14332; | 99.6 | 3×MLI; 1×NAG; 1×PAM; | |||
| Structure of the pore forming fragment of Clostridium difficile toxin B in complex with VHH 5D |
Heteromer | 99.71 | ||||
| Clostridium difficile toxin B CROP domain in complex with FAB domains of neutralizing antibody bezl… |
Heteromer | 100 | ||||
| Crystal structure of TcdB-B1 bound to B39 VHH |
Heteromer | 100 | ||||
| C. difficile Tcdb cysteine protease domain in complex with IP6 | homo-2-mer | 100 | 2×IHP; | |||
| Structure of the C. difficile TcdB cysteine protease domain in complex with a peptide inhibitor | homo-2-mer | 100 | 2×621; 1×CA; 2×NA; 2×IHP; | |||
| state 4 of TcdB and FZD2 at pH5 | monomer | 100.0 | ||||
| State 3 of TcdB and FZD2 at pH5 | monomer | 100.0 | ||||
| cryo-EM structure of apo Clostridioides difficile toxin B | monomer | 100 | 1×ZN; | |||
| Crystal structure of the catalytic domain of toxin B from Clostridium difficile in complex with UDP… | monomer | 99.45 | 1×MN; 1×UDP; 1×GLC; 1×SO4; 4×TBR; | |||
| Crystal structure of Clostridium difficile Toxin B (TcdB) glucosyltransferase in complex with UDP a… | monomer | 100 | 9×EDO; 1×UDP; 1×IFM; 1×MN; | |||
| Clostridium difficile Toxin B (TcdB) glucosyltransferase domain in complex with U2F | monomer | 100 | 1×MN; 1×U2F; 2×SO4; | |||
| Crystal structure of the catalytic domain of toxin B from Clostridium difficile in complex with UDP… | monomer | 99.45 | 1×MN; 1×UDP; 1×GLC; 1×SO4; | |||
| Clostridium difficile Toxin B (TcdB) glucosyltransferase domain in complex with U2F | monomer | 100 | 1×MN; 1×U2F; 2×SO4; | |||
| Crystal structure of Clostridium difficile Toxin B (TcdB) glucosyltransferase in complex with UDP a… | monomer | 100 | 1×NOY; 1×UDP; 3×GOL; 1×MN; | |||
| Clostridium difficile Toxin B (TcdB) glucosyltransferase domain co-crystallized with apigenin | monomer | 100 | 1×MN; | |||
| Structure of the C. difficile TcdB cysteine protease domain | monomer | 100 | 1×IHP; | |||
3 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 8qen.1.A | monomer | 0.75 | 1×ZN; | 100.00 | ||
| 8jb5.1.A | monomer | 0.72 | 1×ZN; | 75.97 | ||
| 8x2i.1.A | monomer | 0.71 | 1×ZN; | 75.97 | ||