P25582 (SPB1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase UniProtKBInterProSTRINGInteractive Modelling

841 aa; Sequence (Fasta) ; 2 identical sequences: Saccharomyces cerevisiae: A0A8H4BSI2, A6ZTE1

Available Structures

15 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model
7nac
 Heteromer
P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04031; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		1-838
2×ZN; 1×SAH;
Assess
State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…
6em5
 Heteromer
O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		24-838
Assess
State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
6elz
 Heteromer
P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		24-838
1×ZN;
Assess
pre-60S State NE1 (TAP-Flag-Nop53)
6ylx
 Heteromer
P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690; 		24-838
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model
7nad
 Heteromer
P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX41; P0CX82; P14120; P14126; P17076; P25808; P39744; P40693; P49166; P49167; P53261; P87262; Q02892; Q04031; Q04660; Q07896; Q07915; Q12024; 		7-734
1×ZN;
Assess
State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model
7u0h
 Heteromer
P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690; 		244-838
1×MG; 4×ZN;
Assess
State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model
7r7a
 Heteromer
P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		251-838
2×ZN;
Assess
Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae
7ohr
 Heteromer
P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; 		254-838
1×ZN;
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model
7naf
 Heteromer
P05749; P0C2H8; P0CX41; P0CX82; P14120; P14126; P38202; P39744; P40010; P40991; Q02892; Q04031; Q07915; Q12522; 		1-389
1×SAH;
Assess
State E1 nucleolar 60S ribosome biogenesis intermediate - Spb4 local model
7r72
 Heteromer
P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX82; P14120; P14126; P17076; P25808; P39744; P40693; P49166; P49167; P53261; P87262; Q02892; Q04660; Q07896; Q07915; Q12024; 		347-734
1×ZN;
Assess
State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region
7r6k
 Heteromer
P05745; P05748; P17076; P36049; P39744; P40078; P40991; P43586; P87262; Q04031; Q04660; Q07896; Q08235; Q08962; 		405-760
Assess
State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model
7r6q
 Heteromer
P04456; P05745; P05748; P0C2H6; P0CX84; P17076; P38779; P40007; P40693; P53261; P53927; P87262; Q03532; Q04660; Q12690; 		449-710
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…
7ohv
 Heteromer
P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P49167; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12024; Q12522; Q12690; 		660-838
1×ZN;
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model
7r7c
 Heteromer
P0CX43; P36049; P40078; P40991; P43586; Q02892; Q04660; Q08235; Q08962; 		827-838
Assess
Structure of methyltransferase domain of Spb1 boudn to SAM
7r7o
monomer12-220
1×SAM;
Assess

3 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
7nac.1.smonomer0.671-838
100.00
Assess
7u0h.1.jmonomer0.54244-838
100.00
Assess
8fkx.1.cmonomer0.52548-838
36.54
Assess