P25582 | SWISS-MODEL Repository

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P25582 (SPB1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase UniProtKB InterPro STRING Interactive Modelling

841 aa; Sequence (Fasta) ; 1 identical sequence: Saccharomyces cerevisiae: A6ZTE1

It is possible new templates exist for this target since these models were created.

Available Structures

16 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model	7nac PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04031; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	1-838	100.0	2×ZN; 1×SAH;
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pre-60S State NE1 (TAP-Flag-Nop53)	6ylx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690;	24-838	100.0
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State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	24-838	100.0
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State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6elz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	24-838	100.0	1×ZN;
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State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model	7nad PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX41; P0CX82; P14120; P14126; P17076; P25808; P39744; P40693; P49166; P49167; P53261; P87262; Q02892; Q04031; Q04660; Q07896; Q07915; Q12024;	7-734	100.0	1×ZN;
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State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model	7u0h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690;	244-838	100.0	1×MG; 4×ZN;
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State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model	7r7a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	251-838	100.0	2×ZN;
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Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae	7ohr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	254-838	100.0	1×ZN;
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60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)	8v87 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12389; Q12522; Q12690;	405-838	100.0	1×ADP; 2×MG; 1×GDP; 1×K; 2×ZN;
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State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model	7naf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05749; P0C2H8; P0CX41; P0CX82; P14120; P14126; P38202; P39744; P40010; P40991; Q02892; Q04031; Q07915; Q12522;	1-389	100.0	1×SAH;
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State E1 nucleolar 60S ribosome biogenesis intermediate - Spb4 local model	7r72 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX82; P14120; P14126; P17076; P25808; P39744; P40693; P49166; P49167; P53261; P87262; Q02892; Q04660; Q07896; Q07915; Q12024;	347-734	100.0	1×ZN;
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State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region	7r6k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P05745; P05748; P17076; P36049; P39744; P40078; P40991; P43586; P87262; Q04031; Q04660; Q07896; Q08235; Q08962;	405-760	100.0
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State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model	7r6q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04456; P05745; P05748; P0C2H6; P0CX84; P17076; P38779; P40007; P40693; P53261; P53927; P87262; Q03532; Q04660; Q12690;	449-710	62.12
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Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…	7ohv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P49167; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12024; Q12522; Q12690;	660-838	100.0	1×ZN;
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State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model	7r7c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0CX43; P36049; P40078; P40991; P43586; Q02892; Q04660; Q08235; Q08962;	827-838	100
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Structure of methyltransferase domain of Spb1 boudn to SAM	7r7o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	12-220	100	1×SAM;
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3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
7nac.1.s	monomer	0.66	1-838	100.00
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7u0h.1.j	monomer	0.54	244-838	100.00
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5m5b.1.A	monomer	0.50	23-223	18.48
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P25582 (SPB1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase UniProtKBInterProSTRINGInteractive Modelling

Available Structures

16 Experimental Structures

3 SWISS-MODEL models

Alignments

Background

Resolution

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase UniProtKB InterPro STRING Interactive Modelling