P25582 (SPB1_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase UniProtKBInterProSTRINGInteractive Modelling
841 aa; Sequence (Fasta) ;
1 identical sequence: Saccharomyces cerevisiae: A6ZTE1
Available Structures
16 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model |
Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04031; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; | 100.0 | 2×ZN; 1×SAH; | |||
| pre-60S State NE1 (TAP-Flag-Nop53) |
Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690; | 100.0 | ||||
| State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes |
Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; | 100.0 | 1×ZN; | |||
| State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr… |
Heteromer O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; | 100.0 | ||||
| State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model |
Heteromer P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX41; P0CX82; P14120; P14126; P17076; P25808; P39744; P40693; P49166; P49167; P53261; P87262; Q02892; Q04031; Q04660; Q07896; Q07915; Q12024; | 100.0 | 1×ZN; | |||
| State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model |
Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P40693; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690; | 100.0 | 1×MG; 4×ZN; | |||
| State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model |
Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; | 100.0 | 2×ZN; | |||
| Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae |
Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40010; P40078; P40693; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690; | 100.0 | 1×ZN; | |||
| 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map) |
Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40693; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12389; Q12522; Q12690; | 100.0 | 1×ADP; 2×MG; 1×GDP; 1×K; 2×ZN; | |||
| State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model |
Heteromer P05749; P0C2H8; P0CX41; P0CX82; P14120; P14126; P38202; P39744; P40010; P40991; Q02892; Q04031; Q07915; Q12522; | 100.0 | 1×SAH; | |||
| State E1 nucleolar 60S ribosome biogenesis intermediate - Spb4 local model |
Heteromer P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX82; P14120; P14126; P17076; P25808; P39744; P40693; P49166; P49167; P53261; P87262; Q02892; Q04660; Q07896; Q07915; Q12024; | 100.0 | 1×ZN; | |||
| State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region |
Heteromer P05745; P05748; P17076; P36049; P39744; P40078; P40991; P43586; P87262; Q04031; Q04660; Q07896; Q08235; Q08962; | 100.0 | ||||
| State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model |
Heteromer P04456; P05745; P05748; P0C2H6; P0CX84; P17076; P38779; P40007; P40693; P53261; P53927; P87262; Q03532; Q04660; Q12690; | 62.12 | ||||
| Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down… |
Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40078; P40693; P49166; P49167; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12024; Q12522; Q12690; | 100.0 | 1×ZN; | |||
| State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model |
Heteromer P0CX43; P36049; P40078; P40991; P43586; Q02892; Q04660; Q08235; Q08962; | 100 | ||||
| Structure of methyltransferase domain of Spb1 boudn to SAM | monomer | 100 | 1×SAM; | |||
3 SWISS-MODEL models
| Template | Oligo-state | QMEAN | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 7nac.1.s | monomer | 0.67 | 100.00 | |||
| 7u0h.1.j | monomer | 0.54 | 100.00 | |||
| 5m5b.1.A | monomer | 0.50 | 18.48 | |||