P69487 (SCAFD_BPS13) Enterobacteria phage S13 (Bacteriophage S13)
External scaffolding protein D UniProtKBInterProInteractive Modelling
152 aa; Sequence (Fasta) ;
205 identical sequences 205 identical sequences
Anaplasma phagocytophilum: A0AA45UU09; Acaulospora morrowiae: A0A9N9E6B5; Tritonibacter multivorans: A0A0P1GCF5; Dorea longicatena: A0A564UER4; Prevotella ruminicola: A0AA37I5C0; Myxococcus virescens: A0A511HQ01; Campylobacter ureolyticus: A0A6N2U5K7; Parabacteroides distasonis: A0A6N3B9T2; Phocaeicola vulgatus: A0A6N2UKM3; Bacteroides uniformis: A0A6N2X256; Ruegeria atlantica: A0A0N7LRE2; Moritella viscosa: A0A1L0AQZ1; Robertmurraya siralis: A0A919WN04; Segatella bryantii: A0AA37I030; uncultured Blautia sp: A0A6N2UBU6; Collinsella aerofaciens: A0A5K1IP25; Culex pipiens: A0A8D8ALK0; Mesorhizobium plurifarium: A0A090EI31; Pelagimonas varians: A0A238L6R7; Vibrio atlanticus: A0A1C3IZE5; Bacteroides faecis: A0A6N2UFI4; Pacificibacter marinus: A0A1Y5TYR9; Anaerostipes hadrus: A0A6N2VZA2; Grimontia marina: A0A128FJM6; Haemonchus placei: A0A0N4VWW8; Toxocara canis: A0A183U2U8; Ascaris lumbricoides: A0A0M3HGE9; Hymenolepis diminuta: A0A0R3SMM0; Schistosoma curassoni: A0A183L7Q4; Xanthomonas citri pv. citri: A0A0U5BQA9; Taenia asiatica: A0A0R3VY81; uncultured Clostridium sp: A0A6N2R6N8; Acetomicrobium hydrogeniformans ATCC BAA-1850: A0A0T5X7K8; Klebsiella oxytoca: A0A6N3AGQ2; Trypanosoma equiperdum: A0A1G4I4Q9; Hanseniaspora guilliermondii: A0A1L0B7L3; Enterobacter agglomerans: A0A6N3FW69; Ornithinibacillus bavariensis: A0A920C9V5; Blautia glucerasea: A0A6N2QUD7; Photobacterium aquimaris: A0A1Y6L2C7; Enterobius vermicularis: A0A0N4UTJ5; Pedobacter sp. V48: W6TP06; Rhizobium tibeticum: A0A1K0KEN1; Desulfitobacterium hafniense: A0A098AUY1; Plasmopara halstedii: A0A0P1B1W8; Lacticaseibacillus rhamnosus: A0A6N2XVH5; Bacteroides caccae: A0A6N2VDT5; Roseovarius aestuarii: A0A1X7BYN8; Parabacteroides merdae: A0A6N3FI51; Streptococcus cristatus: A0A512AEB2; Paraprevotella clara: A0A6N3GL95; Vibrio celticus: A0A1C3JB33; Paenibacillus montaniterrae: A0A920D1L2; Cacopsylla melanoneura: A0A8D9AM89; Blautia wexlerae: A0A564WUA2; Peptoniphilus gorbachii: A0A6N3AXU8; Mesorhizobium sp. ORS 3359: A0A090F0V1; Blautia obeum: A0A564TM30; Ceraceosorus bombacis: A0A0N7L356; Veillonella dispar: A0A6N3BEF0; Veillonella atypica: A0A6N3EHB1; Dorea formicigenerans: A0A564SAL5; Heyndrickxia oleronia: A0A9W5XXG2; Roseibium alexandrii: A0A0M7ARI6; Enterococcus casseliflavus: A0A6N3AE41; Nocardia seriolae: A0A0B8NS82; Xanthomonas citri pv. fuscans: A0A2H1SE77; Citrobacter amalonaticus: A0A6N2XFU4; Pararge aegeria aegeria: A0A8S4R0C9; Thalassovita mediterranea: A0A0P1HDN3; Enterobacteria phage WA10: Q2LLL2; Enterobacteria phage NC51: Q2LLP5; Enterobacteria phage NC41: Q2LLQ6; Enterobacteria phage NC37: Q2LLR7; Enterobacteria phage NC16: Q2LLS8; Enterobacteria phage NC11: Q2LLT9; Enterobacteria phage NC7: Q2LLV0; Enterobacteria phage NC5: Q2LLW1; Enterobacteria phage NC1: Q2LLX2; Enterobacteria phage ID45: Q2LLY3; Enterobacteria phage ID34: Q2LLZ4; Enterobacteria phage ID22: Q2LM05; Ruminococcus gnavus: A0A6N3EM86; Bacteroides intestinalis: A0A6N2WCK1; Pseudomonas simiae: U1UJU0; Shimia marina: A0A0P1EUX2; Xanthomonas campestris pv. phaseoli: A0A2H1PDJ5; Marinomonas aquimarina: A0A1A8TS46; Veillonella parvula: A0A6N3EFK1; Clostridium paraputrificum: A0A6N3ABN3; [Clostridium] nexile: A0A6N2VDE2; Salmonella enterica: A0A5Y7HDB7; Prevotella lacticifex: A0A9R1CYY1; Planktothrix agardhii CCAP 1459/11A: A0A4P5ZLQ7; Nereida ignava: A0A0U1NQ88; Bacteroides ovatus: A0A6N2XIV6; Paenibacillus sp. J45TS6: A0A920DF50; Paenibacillus sp. J31TS4: A0A920DB37; Oceanobacillus sp. J11TS1: A0A919X4H6; Bacillus sp. J14TS2: A0A919WX34; Echinostoma caproni: A0A183A0S0; Protaetiibacter phage SSC1: A0A7L7SSW8; Candidatus Hakubella thermalkaliphila: A0A6V8NKG3; Paenibacillus albilobatus: A0A920CD21; Novosphingobium sp. TCA1: A0A6H9H3G1; Thalassobacter stenotrophicus: A0A0P1EXV5; Intestinibacter bartlettii: A0A6N3ABS3; Shigella phage SGF3: A0A5J6TAL2; Roseobacter cerasinus: A0A640VZN6; Litoreibacter roseus: A0A6N6JM28; Roseibaca ekhonensis: A0A3B0MED3; Pandoraea pneumonica: A0A5E4ZC06; Capnocytophaga felis: A0A5M4BD19; Bacteroidaceae bacterium: A0A6F9Z9A6; Photobacterium andalusiense: A0A1Y6MTD9; Photobacterium malacitanum: A0A1Y6MR92; Enterocloster bolteae: A0A6N2RQ51; Thalassovita autumnalis: A0A0P1FYM2; Haladaptatus sp. T7: A0A9C7QAI8; Photobacterium toruni: A0A1T4V093; Vibrio palustris: A0A1R4B935; Vibrio spartinae: A0A1N6MBI4; Lachnospiraceae bacterium: A0A7U9REL5; Sporanaerobacter sp. PP17-6a: A0A1G4FQD6; Roseibium aggregatum: A0A0M6YFC5; Flavimaricola marinus: A0A238LNN1; Marinomonas gallaica: A0A1C3JV90; Grimontia celer: A0A128FFB9; Marinomonas spartinae: A0A1A8TT87; Paenibacillus apis: A0A920CQ94; Strongyloides papillosus: A0A0N5C5A1; Eubacterium limosum: A0A6N3GP45; Shimia thalassica: A0A0P1IYZ3; Ruegeria denitrificans: A0A0P1IKQ9; Cognatishimia activa: A0A0P1IVG5; Phaeobacter sp. CECT 5382: A0A0P1H4N7; Pseudoprimorskyibacter insulae: A0A2R8B1A7; Bifidobacterium breve: A0A6N2QUD2; Propionispora sp. 2/2-37: A0A0K8JK47; Klebsiella quasipneumoniae subsp. quasipneumoniae: A0A9P1KVF4; Roseburia intestinalis: A0A6N3H2T7; Schaalia odontolytica: A0A6N2U7Z6; Octadecabacter ascidiaceicola: A0A238KS42; Cupriavidus taiwanensis: A0A375JCH2; Aliiroseovarius pelagivivens: A0A2R8AWP0; Pontivivens insulae: A0A2R8AG31; Acidithiobacillus ferrivorans: A0A060USR2; Clostridium tertium: A0A6N2Y634; Thomasclavelia ramosa: A0A6N3AJM5; Hungatella hathewayi: A0A6N3I1C4; Actibacterium lipolyticum: A0A238L853; Clostridium innocuum: A0A6N2UKZ8; Aquimixticola soesokkakensis: A0A1Y5TT60; Clostridium symbiosum: A0A6N3HQN0; Leuconostoc suionicum: A0A2N9KGI4; Ascidiaceihabitans donghaensis: A0A2R8BPV0; Enterobacteria phage MED1: A0A076G727; Streptococcus lutetiensis: A0A6N3BUB5; Clostridioides difficile: A0A6N3DXI7; Clostridium butyricum: A0A6N3HT20; Phytobacter massiliensis: A0A6N3CWN7; Boseongicola aestuarii: A0A238J526; Ruegeria meonggei: A0A1X7ADN1; Paraglomus occultum: A0A9N9CY83; Ambispora gerdemannii: A0A9N9DPF6; Xenorhabdus cabanillasii JM26: W1J4B3; Geobacillus thermopakistaniensis: A0A7U9J8E4; Pseudooctadecabacter jejudonensis: A0A1Y5TNF9; Photobacterium piscicola: A0A1T5I6A6; Dolichospermum planctonicum: A0A480AMK4; Roseovarius gaetbuli: A0A1X7ACP3; Enterococcus faecium: A0A6N2Y4R5; Lucifera butyrica: A0A498QZZ9; Thauera terpenica 58Eu: S9ZAA1; Caldibacillus debilis GB1: A0A420VE36; Mycolicibacterium elephantis DSM 44368: A0A439DN45; Pseudomonas fluorescens LMG 5329: A0A0A1YWL4; Blautia hansenii: A0A6N2VQR6; Streptococcus parasanguinis: A0A6N2Y6W2; Parastrongyloides trichosuri: A0A0N4Z2Y7; Streptococcus pneumoniae: A0A2U3RW35; Roseovarius litorisediminis: A0A1Y5TSF9; Streptococcus salivarius: A0A6N3DHS8; Staphylococcus simulans: A0A6N3ASQ1; Staphylococcus aureus: A0A6N3ESB6; Paenibacillus antibioticophila: A0A920CI22; Finegoldia magna: A0A6N3DRH3; Roseovarius albus: A0A1X7AAK2; Vibrio thalassae: A0A240EN05; Bacillus inaquosorum KCTC 13429: A0A9W5LE40; Fusarium proliferatum: A0A1L7WBG8; Enterobacteria phage phiX174: P69486; Vibrio aerogenes CECT 7868: A0A1M5YZN9; Falsiruegeria litorea R37: A0A1Y5TVX8; Falsiruegeria mediterranea M17: A0A2R8CGF8; Ruegeria arenilitoris: A0A238L3R7; Paenibacillus azoreducens: A0A919YJ92; Vibrio ruber DSM 16370: A0A1R4LU60; Chlamydia psittaci 08-2626_L3: A0AA37EGE0; Escherichia phage phiX174: A3FJA3; Pyronema omphalodes: U4LC32; Penicillium brasilianum: A0A0F7U5B4; Veillonella ratti: A0A6N3A720; Pelagimonas phthalicica: A0A238JJG7; Rodentolepis nana: A0A0R3TE31
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It is possible new templates exist for this target since these models were created.
Available Structures
4 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Ligands | ||
|---|---|---|---|---|---|---|
| PROCAPSID OF BACTERIOPHAGE PHIX174 |
Heteromer P03633; P03641; P03643; P69486; | 5-152 | ||||
| Assess | ||||||
| PROCAPSID OF BACTERIOPHAGE PHIX174 |
Heteromer P03633; P03641; P03643; P69486; | 5-152 | ||||
| Assess | ||||||
| Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy |
Heteromer P08767; P31281; P69486; | 5-152 | ||||
| Assess | ||||||
| gpd prior to capsid assembly | homo-2-mer | 4-144 | ||||
| Assess | ||||||
2 SWISS-MODEL models
| Template | Oligo-state | QMEANDisCo | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 1al0.3.Y | monomer | 0.73 | 7-152 | 100.00 | ||
| Assess | ||||||
| 1al0.2.H | monomer | 0.70 | 6-148 | 100.00 | ||
| Assess | ||||||
| Model ID | Oligo-state | Avg pLDDT | Range | Trg-Mdl Seq Id (%) |
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| Model ID | Oligo-state | Avg Confidence | Range | Trg-Mdl Seq id (%) |
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