P98160 (PGBM_HUMAN) Homo sapiens (Human)

Basement membrane-specific heparan sulfate proteoglycan core protein UniProtKBInterProSTRINGInteractive Modelling

4391 aa; Sequence (Fasta)

Molecule Processing

Sequence Features

 4258Calcium
 4275Calcium; via carbonyl oxygen
 4325Calcium; via carbonyl oxygen
 4327Calcium
 68D -> E (in dbSNP:rs1869780) VAR_047979 dbSNP
 303L -> H (in dbSNP:rs17460381) VAR_057051 dbSNP
 638M -> V (in dbSNP:rs1874792) VAR_047980 dbSNP
 765N -> S (in dbSNP:rs989994) VAR_047981 dbSNP
 1186R -> Q (in dbSNP:rs2229481) VAR_047982 dbSNP
 1323L -> V (in dbSNP:rs10917058) VAR_057052 dbSNP
 1503A -> V (in dbSNP:rs897471) VAR_047983 dbSNP
 1532C -> Y (in SJS1; dbSNP:rs137853248) VAR_014122 dbSNP
 1758R -> Q (in dbSNP:rs2229483) VAR_047984 dbSNP
 1919R -> C (in dbSNP:rs2229474) VAR_047985 dbSNP
 1967V -> I (in dbSNP:rs2229475) VAR_047986 dbSNP
 2980L -> H (in dbSNP:rs2229489) VAR_047987 dbSNP
 2981V -> I (in dbSNP:rs2229490) VAR_047988 dbSNP
 2995S -> G (in dbSNP:rs2229491) VAR_047989 dbSNP
 3168A -> T (in dbSNP:rs2228349) VAR_047990 dbSNP
 3256H -> Y (in dbSNP:rs2291827) VAR_047991 dbSNP
 3530R -> W (in dbSNP:rs2270699) VAR_047992 dbSNP
 3632R -> Q (in dbSNP:rs2229493) VAR_047993 dbSNP
 3640V -> I (in dbSNP:rs17459097) VAR_047994 dbSNP
 4331S -> N (in dbSNP:rs3736360) VAR_047995 dbSNP
 4196-4197Cleavage; by BMP1
 199-212
 206-225
 219-234
 285-297
 292-310
 304-319
 325-337
 332-350
 344-359
 368-381
 375-394
 388-403
 764-773
 766-780
 783-792
 795-811
 814-829
 816-839
 842-851
 854-869
 879-892
 894-903
 906-921
 1159-1168
 1161-1175
 1178-1187
 1190-1206
 1209-1224
 1211-1234
 1237-1246
 1249-1263
 1275-1287
 1277-1293
 1295-1304
 1307-1322
 1563-1572
 1565-1579
 1582-1591
 1594-1610
 1613-1628
 1615-1638
 1641-1650
 1653-1668
 3819-3845
 3848-3859
 3853-3869
 3871-3880
 3888-3899
 3893-3910
 3912-3921
 4076-4102
 4108-4119
 4113-4129
 4131-4140
 4147-4159
 4153-4164
 4166-4175
 4355-4389
 198-234Low-density lipoprotein (LDL) receptor class A repeat
IPR002172PF00057
 284-319Low-density lipoprotein (LDL) receptor class A repeat
IPR002172PF00057
 324-359Low-density lipoprotein (LDL) receptor class A repeat
IPR002172PF00057
 368-403Low-density lipoprotein (LDL) receptor class A repeat
IPR002172PF00057
 595-729Laminin IV
IPR000034PF00052
 764-806Laminin EGF domain
IPR002049PF00053
 814-869Laminin EGF domain
IPR002049PF00053
 990-1124Laminin IV
IPR000034PF00052
 1125-1149Laminin EGF domain
IPR002049PF00053
 1159-1206Laminin EGF domain
IPR002049PF00053
 1209-1263Laminin EGF domain
IPR002049PF00053
 1275-1322Laminin EGF domain
IPR002049PF00053
 1396-1528Laminin IV
IPR000034PF00052
 1529-1551Laminin EGF domain
IPR002049PF00053
 1563-1610Laminin EGF domain
IPR002049PF00053
 1613-1668Laminin EGF domain
IPR002049PF00053
 1866-1950Immunoglobulin I-set
IPR013098PF07679
 1956-2042Immunoglobulin I-set
IPR013098PF07679
 2437-2520Immunoglobulin I-set
IPR013098PF07679
 2827-2910Immunoglobulin I-set
IPR013098PF07679
 2929-3009Immunoglobulin-like domain
IPR007110PF13895
 3212-3295Immunoglobulin I-set
IPR013098PF07679
 3299-3382Immunoglobulin I-set
IPR013098PF07679
 3402-3483Immunoglobulin I-set
IPR013098PF07679
 3494-3572Immunoglobulin I-set
IPR013098PF07679
 3580-3658Immunoglobulin I-set
IPR013098PF07679
 3692-3829Laminin G domain
IPR001791PF00054
 3848-3879EGF-like domain
IPR000742PF00008
 3960-4088Laminin G domain
IPR001791PF00054
 4108-4138EGF-like domain
IPR000742PF00008
 4234-4362Laminin G domain
IPR001791PF00054

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Laminin G like domain 3 from human perlecanmonomer 3sh44197-4391
Calcium-bound Laminin G like domain 3 from human perlecanmonomer CA;3sh54203-4391

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -4.303dmk.1.A2934-3661
23.12
monomer -4.333dmk.1.A2825-3575
23.33
monomer -4.363b43.1.A2831-3382
29.11
monomer -4.485oj6.1.D3121-3712
25.00
monomer -4.873b43.1.A2923-3483
26.37
monomer -4.525oj2.2.A3124-3708
27.71