Q04538 (POLG_POWVL) Tick-borne powassan virus (strain LB) (POWV) (Powassan virus)

Genome polyprotein UniProtKBInterProInteractive Modelling

3415 aa; Sequence (Fasta) Identical sequences: Powassan virus: A0A2S1TY98

Molecule Processing
Capsid protein C
Protein prM
Peptide pr
Small envelope protein M
Envelope protein E
Non-structural protein 1
Non-structural protein 2A
Serine protease subunit NS2B
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
RNA-directed RNA polymerase NS5

Sequence Features

 1543Charge relay system; for serine protease NS3 activity
 1567Charge relay system; for serine protease NS3 activity
 1627Charge relay system; for serine protease NS3 activity
 2573For 2'-O-MTase activity
 2658For 2'-O-MTase activity
 2695For 2'-O-MTase activity
 2731For 2'-O-MTase activity
 2951Zinc 1
 2955Zinc 1; via tele nitrogen
 2960Zinc 1
 2963Zinc 1
 3225Zinc 2; via tele nitrogen
 3241Zinc 2
 3360Zinc 2
 1950Involved in NS3 ATPase and RTPase activities
 1953Involved in NS3 ATPase and RTPase activities
 2525mRNA cap binding
 2528mRNA cap binding; via carbonyl oxygen
 2529mRNA cap binding
 2531mRNA cap binding; via carbonyl oxygen
 2536mRNA cap binding
 2540mRNA cap binding
 2573Essential for 2'-O-methyltransferase activity
 2658Essential for 2'-O-methyltransferase and N-7 methyltransferase activity
 2662mRNA cap binding
 2695Essential for 2'-O-methyltransferase activity
 2726mRNA cap binding
 2728mRNA cap binding
 2731Essential for 2'-O-methyltransferase activity
 97-117Helical
 244-260Helical
 262-278Helical
 727-747Helical
 755-775Helical
 1188-1208Helical
 1234-1253Helical
 1255-1275Helical
 1293-1313Helical
 1328-1348Helical
 1360-1378Helical
 1383-1403Helical
 1453-1473Helical
 2164-2184Helical
 2191-2210Helical
 2212-2232Helical
 2244-2264Helical; Note=Signal for NS4B
 2301-2321Helical
 2345-2365Helical
 2370-2390Helical
 2434-2454Helical
 2480-2500Helical
 1688-1695ATP
 94-95Cleavage; by viral protease NS3
 114-115Cleavage; by host signal peptidase
 115-116Cleavage; by host signal peptidase
 203-204Cleavage; by host furin
 278-279Cleavage; by host signal peptidase
 775-776Cleavage; by host signal peptidase
 1128-1129Cleavage; by host
 1358-1359Cleavage; by viral protease NS3
 1489-1490Cleavage; by autolysis
 2111-2112Cleavage; by autolysis
 2237-2238Cleavage; by viral protease NS3
 2260-2261Cleavage; by host signal peptidase
 2512-2513Cleavage; by viral protease NS3
 281-308
 338-399
 338-394
 352-383
 370-399
 370-394
 464-568
 585-617
 779-790
 830-920
 955-1000
 1057-1106
 1068-1090
 1089-1093
 4-114Flavivirus capsid protein C
IPR001122PF01003
 137-200Flavivirus polyprotein propeptide
IPR002535PF01570
 280-579Flavivirus glycoprotein central and dimerisation domain
IPR011998PF00869
 582-668Flavivirus glycoprotein E, immunoglobulin-like domain
IPR027287PF02832
 778-1129Flavivirus non-structural protein NS1
IPR001157PF00948
 1141-1313Flavivirus non-structural protein NS2A
IPR000752PF01005
 1508-1657Flavivirus NS3, petidase S7
IPR001850PF00949
 1679-1825DEAD box, Flavivirus
IPR011492PF07652
 2115-2255Flavivirus non-structural protein NS4A
IPR000404PF01350
 2261-2504Flavivirus non-structural protein NS4B
IPR001528PF01349
 2567-2734Ribosomal RNA methyltransferase FtsJ domain
IPR002877PF01728
 2768-3402RNA-directed RNA polymerase, flavivirus
IPR000208PF00972

Sequence Alignments

Envelope protein E 279-775; PRO_0000037727

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -2.265o6v.1.B279-771
78.23

Serine protease NS3 1490-2111; PRO_0000037731

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.665yw1.1.A1493-2111
44.44
monomer MN;-2.112whx.1.A1512-2111
44.44
monomer -3.132wzq.1.A1511-2111
45.87
monomer -2.752wv9.1.A1509-2110
45.97

RNA-directed RNA polymerase NS5 2513-3415; PRO_0000037734

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;-2.225m2x.1.A2518-3398
58.55
monomer ZN;-2.675dto.1.A2517-3396
58.69