Q06502 (RPOA_LDVC) Lactate dehydrogenase elevating virus (strain C) (LDV)

Replicase polyprotein 1ab UniProtKBInterProInteractive Modelling

3637 aa; Sequence (Fasta) ; (Isoform 2; )

Molecule Processing
Nsp1-alpha papain-like cysteine proteinase
Nsp1-beta papain-like cysteine proteinase
Nsp2 cysteine proteinase
Non-structural protein 3
3C-like serine proteinase
Non-structural protein 5-6-7
Non-structural protein 5
Non-structural protein 6
Non-structural protein 7-alpha
Non-structural protein 7-beta
Non-structural protein 8
RNA-directed RNA polymerase
Helicase
Non-structural protein 11
Non-structural protein 12

Sequence Features

 76For Nsp1-alpha papain-like cysteine proteinase activity
 147For Nsp1-alpha papain-like cysteine proteinase activity
 269For Nsp1-beta papain-like cysteine proteinase activity
 340For Nsp1-beta papain-like cysteine proteinase activity
 390For Nsp2 cysteine proteinase activity
 456For Nsp2 cysteine proteinase activity
 1549Charge relay system; for 3C-like serine proteinase activity
 1574Charge relay system; for 3C-like serine proteinase activity
 1626Charge relay system; for 3C-like serine proteinase activity
 2871Zinc 1
 2874Zinc 1
 2884Zinc 2
 2889Zinc 1
 2892Zinc 1
 2894Zinc 2
 2896Zinc 2
 2898Zinc 2
 2905Zinc 3
 2907Zinc 3
 2914Zinc 3
 2917Zinc 3
 940-960Helical
 981-1001Helical
 1083-1103Helical
 1287-1307Helical
 1362-1382Helical
 1390-1410Helical
 1423-1443Helical
 1735-1755Helical
 1761-1781Helical
 1801-1821Helical
 1824-1844Helical
 1853-1873Helical
 8-28C4-type; atypical
 3013-3020ATP
 181-182Cleavage; by autolysis
 381-382Cleavage; by autolysis
 1284-1285Cleavage; by CP2
 1510-1511Cleavage; by 3CLSP
 1712-1713Cleavage; by 3CLSP
 1898-1899Cleavage; by 3CLSP
 1914-1915Cleavage; by 3CLSP
 2046-2047Cleavage; by 3CLSP
 2181-2182Cleavage; by 3CLSP
 2864-2865Cleavage; by 3CLSP
 3293-3294Cleavage; by 3CLSP
 3515-3516Cleavage; by 3CLSP
 57-162Arterivirus papain-like cysteine protease alpha (PCPalpha) domain
IPR008741PF05410
 256-380Arterivirus papain-like cysteine protease beta (PCPbeta) domain
IPR025773PF05411
 381-486Arterivirus Nsp2, peptidase C33
IPR008743PF05412
 1418-1713Equine arteritis virus peptidase S32
IPR008760PF05579
 1916-2043Arterivirus nonstructural protein 7 alpha
IPR031932PF16749
 2525-2797RNA-directed RNA polymerase, C-terminal domain
IPR001205PF00680
 3011-3230(+) RNA virus helicase core domain
IPR027351PF01443
 3606-3637Protein of unknown function DUF3756
IPR022230PF12581

Sequence Alignments

Helicase 2865-3293; PRO_0000036641

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;-4.474n0n.1.A2871-3247
36.76