Q074N0 (POLG_YEFVE) Yellow fever virus (isolate Ethiopia/Couma/1961) (YFV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3412 aa; Sequence (Fasta)

Molecule Processing
Capsid protein C
Protein prM
Peptide pr
Small envelope protein M
Envelope protein E
Non-structural protein 1
Non-structural protein 2A
Non-structural protein 2A-alpha
Serine protease subunit NS2B
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
RNA-directed RNA polymerase NS5

Sequence Features

 1537Charge relay system; for serine protease NS3 activity
 1561Charge relay system; for serine protease NS3 activity
 1622Charge relay system; for serine protease NS3 activity
 2568For 2'-O-MTase activity
 2653For 2'-O-MTase activity
 2689For 2'-O-MTase activity
 2725For 2'-O-MTase activity
 2946Zinc 1
 2950Zinc 1; via tele nitrogen
 2955Zinc 1
 2958Zinc 1
 3223Zinc 2; via tele nitrogen
 3239Zinc 2
 3358Zinc 2
 1945Involved in NS3 ATPase and RTPase activities
 1948Involved in NS3 ATPase and RTPase activities
 2520mRNA cap binding
 2523mRNA cap binding; via carbonyl oxygen
 2524mRNA cap binding
 2526mRNA cap binding; via carbonyl oxygen
 2531mRNA cap binding
 2535mRNA cap binding
 2568Essential for 2'-O-methyltransferase activity
 2653Essential for 2'-O-methyltransferase and N-7 methyltransferase activity
 2657mRNA cap binding
 2689Essential for 2'-O-methyltransferase activity
 2720mRNA cap binding
 2722mRNA cap binding
 2725Essential for 2'-O-methyltransferase activity
 105-125Helical
 245-265Helical
 271-285Helical
 731-751Helical
 758-778Helical
 1133-1153Helical
 1202-1222Helical
 1288-1308Helical
 1356-1376Helical
 1379-1399Helical
 1457-1477Helical
 2158-2178Helical
 2187-2207Helical
 2210-2230Helical
 2242-2262Helical; Note=Signal for NS4B
 2294-2314Helical
 2361-2380Helical
 2422-2442Helical
 2446-2466Helical
 1682-1689ATP
 101-102Cleavage; by viral protease NS3
 121-122Cleavage; by host signal peptidase
 210-211Cleavage; by host furin
 285-286Cleavage; by host signal peptidase
 778-779Cleavage; by host signal peptidase
 1130-1131Cleavage; by host
 1354-1355Cleavage; by viral protease NS3
 1484-1485Cleavage; by autolysis
 2107-2108Cleavage; by autolysis
 2233-2234Cleavage; by viral protease NS3
 2256-2257Cleavage; by host signal peptidase
 2507-2508Cleavage; by viral protease NS3
 288-315
 345-406
 345-401
 359-390
 377-406
 377-401
 467-568
 585-615
 782-793
 833-921
 957-1002
 1058-1107
 1069-1091
 1090-1094
 5-118Flavivirus capsid protein C
IPR001122PF01003
 126-209Flavivirus polyprotein propeptide
IPR002535PF01570
 212-285Envelope glycoprotein M, flavivirus
IPR000069PF01004
 287-579Flavivirus glycoprotein central and dimerisation domain
IPR011998PF00869
 581-676Flavivirus glycoprotein E, immunoglobulin-like domain
IPR027287PF02832
 780-1132Flavivirus non-structural protein NS1
IPR001157PF00948
 1139-1323Flavivirus non-structural protein NS2A
IPR000752PF01005
 1358-1484Flavivirus non-structural protein NS2B
IPR000487PF01002
 1504-1655Flavivirus NS3, petidase S7
IPR001850PF00949
 1673-1818DEAD box, Flavivirus
IPR011492PF07652
 2111-2253Flavivirus non-structural protein NS4A
IPR000404PF01350
 2257-2501Flavivirus non-structural protein NS4B
IPR001528PF01349
 2562-2730Ribosomal RNA methyltransferase FtsJ domain
IPR002877PF01728
 2759-3403RNA-directed RNA polymerase, flavivirus
IPR000208PF00972

Sequence Alignments

Envelope protein E 286-778; PRO_0000261565

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -1.336ivz.1.A287-677
99.75

Serine protease NS3 1485-2107; PRO_0000261570

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer MN;-1.642whx.1.A1507-2107
49.92
monomer -2.355yvu.1.A1486-2107
49.59

RNA-directed RNA polymerase NS5 2508-3412; PRO_0000261574

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;SAH;-1.076qsn.2.A2513-3401
91.49
monomer ZN;MG;-2.595dto.1.A2512-3394
60.36