Q2YDS1 | SWISS-MODEL Repository

Q2YDS1 (DDB2_DANRE) Danio rerio (Zebrafish) (Brachydanio rerio)

DNA damage-binding protein 2 UniProtKB InterPro STRING Interactive Modelling

496 aa; Sequence (Fasta) ; (Isoform 2)

It is possible new templates exist for this target since these models were created.

Available Structures

9 Experimental Structures

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	Structure of the hsDDB1-drDDB2 complex	3ei3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q16531;	67-421	99.44	1×PG4;
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	Structure of hsDDB1-drDDB2 bound to a 16 bp abasic site containing DNA-duplex	3ei2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q16531;	67-421	99.44	1×PG4;
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	Structure of hsDDB1-drDDB2 bound to a 14 bp 6-4 photoproduct containing DNA-duplex	3ei1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q16531;	67-421	99.44	1×PG4;
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	Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.6 A resolu…	4a0a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q16531;	67-421	99.44	1×CA;
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	STRUCTURE OF DDB1-DDB2-CUL4A-RBX1 BOUND TO A 12 BP ABASIC SITE CONTAINING DNA-DUPLEX	4a0k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P62878; Q13619; Q16531;	67-421	99.44
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	Structure of DDB1-DDB2-CUL4B-RBX1 bound to a 12 bp abasic site containing DNA-duplex	4a0l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P62878; Q13620; Q16531;	67-421	99.44
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	Structure of hsDDB1-drDDB2 bound to a 15 bp CPD-duplex (purine at D-1 position) at 3.1 A resolution…	4a09 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q16531;	68-421	99.44	1×CA;
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	Structure of hsDDB1-drDDB2 bound to a 16 bp CPD-duplex (pyrimidine at D-1 position) at 3.8 A resolu…	4a0b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q16531;	68-421	99.44
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	Structure of hsDDB1-drDDB2 bound to a 13 bp CPD-duplex (purine at D-1 position) at 3.0 A resolution…	4a08 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q16531;	69-421	99.43	2×MES; 2×CA;
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8 SWISS-MODEL models

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	3ei3.1.B	monomer	0.86	67-421		99.45
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	4e54.1.B	monomer	0.68	21-421		48.90
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	7mq9.19.A	monomer	0.54	65-465		14.29
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	6rxv.4.A	monomer	0.53	66-465		13.10
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	5h3s.1.A	monomer	0.53	64-464		14.40
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	4ci8.1.A	monomer	0.52	65-464		15.26
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	4zn4.1.A	monomer	0.52	99-467		15.61
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	1pev.1.A	monomer	0.51	68-465		13.23
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Alignments