Q53GS9 | SWISS-MODEL Repository

Q53GS9 (UBP39_HUMAN) Homo sapiens (Human)

Ubiquitin carboxyl-terminal hydrolase 39 UniProtKB InterPro STRING Interactive Modelling

565 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3)

It is possible new templates exist for this target since these models were created.

Available Structures

6 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)	6ah0 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O43172; O43395; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q15029; Q15393; Q15427; Q15428; Q15459; Q6P2Q9; Q7RTV0; Q8WWY3; Q96DI7; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Y9; Q9Y4Z0;	103-565	1×IHP; 1×GTP; 1×MG;
Assess
Cryo-EM Structure of the human minor pre-B complex (pre-precatalytic spliceosome) U11 and tri-snRNP…	8y6o SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O43172; O43290; O43395; O75643; O94906; P14678; P55769; P62304; P62306; P62308; P62314; P62316; P62318; Q13523; Q15029; Q16560; Q6IEG0; Q6P2Q9; Q86UT8; Q8N8D1; Q8WWY3; Q96DI7; Q9BUQ8; Q9BV90; Q9NX01; Q9UDW3;	100-557	2×MG; 1×IHP; 1×GTP; 6×ZN;
Assess
Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.	6qw6 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O43172; O43290; O43395; O75643; O94906; O95777; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q15029; Q6P2Q9; Q8WVK2; Q8WWY3; Q96DI7; Q9BTD8; Q9BUQ8; Q9UK45; Q9Y333; Q9Y4Y9; Q9Y4Z0;	100-555	1×IHP; 1×MG; 1×GTP; 1×ZN;
Assess
Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.	8h6j SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O43172; O43290; O43395; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q13523; Q15029; Q15393; Q15427; Q15428; Q15459; Q6P2Q9; Q7RTV0; Q8WVK2; Q8WWY3; Q96DI7; Q9BTD8; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Y9; Q9Y4Z0;	100-555	1×IHP; 1×MG; 1×GTP; 1×ZN;
Assess
Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.	8h6e SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O43172; O43290; O43395; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q13523; Q15029; Q15393; Q15427; Q15428; Q15459; Q6P2Q9; Q7RTV0; Q8WVK2; Q8WWY3; Q96DI7; Q9BTD8; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Y9; Q9Y4Z0;	100-555	1×IHP; 1×MG; 1×GTP; 1×ZN;
Assess
3D structure determination of the humanU4/U6.U5 tri-snRNP complex	3jcr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O43172; O43395; O75643; O94906; O95777; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q15029; Q6P2Q9; Q8WWY3; Q96DI7; Q9BUQ8; Q9UK45; Q9Y333; Q9Y4Y9; Q9Y4Z0;	105-556
Assess

3 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8y6o.1.i	monomer	0.83	100-557	1×ZN;	100.00
Assess
4fip.1.A	monomer	0.57	122-557	1×ZN;	20.77
Assess
6t9l.1.K	monomer	0.53	119-557		20.61
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

7 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	8y6o.1.i	monomer	0.83	22-454		97.37
Assess
Isoform 2	3mhs.1.A	monomer	0.57	38-454		19.84
Assess
Isoform 2	4fjc.1.A	monomer	0.54	38-454		19.84
Assess
Isoform 2	3ihp.2.A	monomer	0.52	38-453		19.49
Assess
Isoform 3	6qw6.1.c	monomer	0.81	100-481	1×ZN;	98.96
Assess
Isoform 3	4fip.1.E	monomer	0.53	122-480	1×ZN;	20.06
Assess
Isoform 3	4zux.1.K	monomer	0.52	120-480		19.62
Assess

Alignments