Q70622 (GAG_HV1LW) Human immunodeficiency virus type 1 group M subtype B (isolate LW123)(HIV-1)

Gag polyprotein UniProtKBInterProInteractive Modelling

500 aa; Sequence (Fasta)

Molecule Processing
Matrix protein p17
Capsid protein p24
Nucleocapsid protein p7
p6-gag

Sequence Features

Add
 390-407CCHC-type 1
 411-428CCHC-type 2
 132-133Cleavage; by viral protease
 363-364Cleavage; by viral protease
 377-378Cleavage; by viral protease
 432-433Cleavage; by viral protease
 448-449Cleavage; by viral protease
 2-132Immunodeficiency lentiviral matrix, N-terminal
IPR000071PF00540
 149-349Retroviral nucleocapsid protein Gag, p24 fragment
IPR000721PF00607
 391-406Zinc finger, CCHC-type
IPR001878PF00098
 412-428Zinc finger, CCHC-type
IPR001878PF00098
 449-486Gag protein p6
IPR014817PF08705

Sequence Alignments

Capsid protein p24 133-363; PRO_0000038488

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer 0.086mqo.1.A133-353
97.84
Assess
monomer -0.232m8l.1.B133-353
98.27
Assess
monomer -0.672m8n.1.A133-353
98.27
Assess

Nucleocapsid protein p7 378-432; PRO_0000038490

DescriptionOligo-stateLigandsStructureRange
ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HI…monomer ZN;1hvo 390-407
Assess
ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HI…monomer ZN;1hvn 390-407
Assess
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer ZN;-1.402l4l.1.A388-432
95.56
Assess
monomer ZN;-2.771q3y.1.A390-430
95.12
Assess

Experimental structures

DescriptionOligo-stateLigandsStructureRange
NMR structure of the (345-392)Gag sequence from HIV-1monomer 1u57343-390
Assess

Homology models

Oligo-stateQMEANTemplateRangeSeq id (%)Ligands
monomer -2.66 1l6n.1.A2-283
95.05
Assess