Q70622 (GAG_HV1LW) Human immunodeficiency virus type 1 group M subtype B (isolate LW123)(HIV-1)
Gag polyprotein UniProtKBInterProInteractive Modelling
500 aa; Sequence (Fasta)
Molecule Processing
| Matrix protein p17 | |
| Capsid protein p24 | |
| Nucleocapsid protein p7 | |
| p6-gag |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 390-407 | CCHC-type 1 | ||
| 411-428 | CCHC-type 2 | ||
| 132-133 | Cleavage; by viral protease | ||
| 363-364 | Cleavage; by viral protease | ||
| 377-378 | Cleavage; by viral protease | ||
| 432-433 | Cleavage; by viral protease | ||
| 448-449 | Cleavage; by viral protease | ||
| 2-132 | Immunodeficiency lentiviral matrix, N-terminal IPR000071PF00540 | ||
| 149-349 | Retroviral nucleocapsid protein Gag, p24 fragment IPR000721PF00607 | ||
| 391-406 | Zinc finger, CCHC-type IPR001878PF00098 | ||
| 412-428 | Zinc finger, CCHC-type IPR001878PF00098 | ||
| 449-486 | Gag protein p6 IPR014817PF08705 |
Sequence Alignments
Capsid protein p24 133-363; PRO_0000038488
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 0.08 | 6mqo.1.A | 97.84 | ||
| Assess | |||||
| monomer | -0.23 | 2m8l.1.B | 98.27 | ||
| Assess | |||||
| monomer | -0.67 | 2m8n.1.A | 98.27 | ||
| Assess | |||||
Nucleocapsid protein p7 378-432; PRO_0000038490
| Description | Oligo-state | Ligands | Structure | Range | |
|---|---|---|---|---|---|
| ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HI… | monomer | 1×ZN; | 1hvo | ||
| Assess | |||||
| ZINC-AND SEQUENCE-DEPENDENT BINDING TO NUCLEIC ACIDS BY THE N-TERMINAL ZINC FINGER DOMAIN OF THE HI… | monomer | 1×ZN; | 1hvn | ||
| Assess | |||||
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | 2×ZN; | -1.40 | 2l4l.1.A | 95.56 | |
| Assess | |||||
| monomer | 1×ZN; | -2.77 | 1q3y.1.A | 95.12 | |
| Assess | |||||
Experimental structures
| Description | Oligo-state | Ligands | Structure | Range |
|---|---|---|---|---|
| NMR structure of the (345-392)Gag sequence from HIV-1 | monomer | 1u57 | ||
| Assess | ||||
Homology models
| Oligo-state | QMEAN | Template | Range | Seq id (%) | Ligands |
|---|---|---|---|---|---|
| monomer | -2.66 | 1l6n.1.A | 95.05 | ||
| Assess | |||||