Q71SY5 | SWISS-MODEL Repository

Q71SY5 (MED25_HUMAN) Homo sapiens (Human)

Mediator of RNA polymerase II transcription subunit 25 UniProtKB InterPro STRING Interactive Modelling

747 aa; Sequence (Fasta) ; (Isoform 4; Isoform 5; Isoform 6)

It is possible new templates exist for this target since these models were created.

Available Structures

7 Experimental Structures

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	Human Mediator (deletion of MED1-IDR) in a Tail-extended conformation	7emf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O43513; O60244; O75448; O75586; O95402; Q13503; Q15528; Q15648; Q6P2C8; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7;	14-231	100.0	2×ZN;
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	Structure of the human Mediator-bound transcription pre-initiation complex	7lbm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0JLT2; O15514; O43513; O60244; O75448; O75586; P13984; P18074; P19387; P19388; P19447; P20226; P24928; P29083; P29084; P30876; P32780; P35269; P36954; P50613; P51946; P51948; P52434; P52435; P52655; P52657; P53803; P61218; P62487; P62875; Q00403; Q13503; Q13888; Q13889; Q15528; Q6P2C8; Q6ZYL4; Q92759; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9ULK4; Q9Y2X0; Q9Y3C7;	15-230	100.0	2×MG; 16×ZN; 1×SF4;
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	CryoEM structure of TR-TRAP	8t9d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43513; O60244; O75448; O75586; Q13503; Q15528; Q15648; Q6P2C8; Q96G25; Q96HR3; Q96RN5; Q9BTT4; Q9BUE0; Q9H204; Q9H944; Q9NPJ6; Q9NVC6; Q9NWA0; Q9NX70; Q9P086; Q9UHV7; Q9ULK4; Q9Y2X0; Q9Y3C7;	15-216	100.0
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	Structure of ARC92VBD/MED25ACID	2ky6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	391-553	100
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	NMR structure of the ACID (ACtivator Interacting Domain) of the human mediator Med25 protein	2l23 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	391-548	100
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	Solution NMR Structure of Med25(391-543) Comprising the Activator-Interacting Domain (ACID) of Huma…	2l6u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	391-543	100
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	The Mediator Med25 activator interaction domain: Structure and cooperative binding of VP16 subdomai…	2xnf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	394-543	100
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2 SWISS-MODEL models

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	2ky6.1.A	monomer	0.71	392-552		100.00
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	7emf.1.U	monomer	0.69	14-231		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

5 SWISS-MODEL models built on isoform sequence

	Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	Isoform 4	7emf.1.U	monomer	0.69	14-231		97.82
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	Isoform 5	2ky6.1.A	monomer	0.71	375-535		100.00
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	Isoform 5	7emf.1.U	monomer	0.69	14-231		100.00
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	Isoform 6	2ky6.1.A	monomer	0.71	178-339		100.00
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	Isoform 6	6w1s.1.T	monomer	0.58	15-64		92.00
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Alignments