Q86YL7 | SWISS-MODEL Repository

Q86YL7 (PDPN_HUMAN) Homo sapiens (Human)

Podoplanin UniProtKB InterPro STRING Interactive Modelling

162 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 5; Isoform 6)

Available Structures

6 Experimental Structures

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag in…	7cqc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O67776;	38-51	100
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	The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag in…	7cqd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O67776;	38-51	100
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	Crystal structure of monoclonal anti-human podoplanin antibody NZ-1 with bound PA peptide	4yo0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	40-51	100
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	Crystal structure of NZ-1 Fv-clasp fragment with its antigen peptide	5xcv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	40-50	100	2×CA;
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	Crystal structure of CLEC-2 in complex with O-glycosylated podoplanin	3wsr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q9P126;	46-54	100	1×A2G;
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	Crystal structure of the anti-human podoplanin antibody Fab fragment complex with glycopeptide	7c94 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	75-82	100	1×A2G; 1×PO4; 4×GOL;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	7v0k.1.H	monomer	0.52	115-156		19.15
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

5 SWISS-MODEL models built on isoform sequence

	Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	Isoform 2	7oy2.1.A	monomer	0.57	27-68		23.81
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	Isoform 3	5zaz.1.A	monomer	0.59	199-234		22.22
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	Isoform 4	7phr.1.D	monomer	0.57	200-232		24.32
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	Isoform 5	5zaz.1.A	monomer	0.59	80-117		21.05
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	Isoform 6	5zaz.1.A	monomer	0.68	80-115		22.22
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Alignments