Q8N7H5 | SWISS-MODEL Repository

Q8N7H5 (PAF1_HUMAN) Homo sapiens (Human)

RNA polymerase II-associated factor 1 homolog UniProtKB InterPro STRING Interactive Modelling

531 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3)

It is possible new templates exist for this target since these models were created.

Available Structures

14 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4)	7opc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VM56; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; P62878; Q03468; Q13216; Q13619; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q9GZS3;	25-337	100.0	8×ZN; 1×MG;
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Pol II-CSB-CSA-DDB1-UVSSA-PAF-SPT6 (Structure 3)	7oop PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; Q03468; Q13216; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q9GZS3;	25-337	100.0	8×ZN; 1×MG;
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Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 5)	7opd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; P62878; Q03468; Q13216; Q13619; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q9GZS3;	25-337	100.0	8×ZN; 1×MG;
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Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome	7unc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q9GZS3;	25-335	100.0	8×ZN; 1×MG;
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Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38)	7und PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q9GZS3;	25-335	100.0	9×ZN; 1×MG;
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Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elo…	6ted PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q9GZS3;	25-335	100.0	9×ZN; 1×MG;
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Structure of mammalian Pol II-DSIF-SPT6-PAF1-TFIIS-hexasome elongation complex	8a3y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A287ADR4; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VYD0; A0A7M4DUC2; A0A8D0JYF1; A0A8J1LZU9; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q9GZS3;	25-335	100.0	9×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, bp +27	9egz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3;	25-335	100.0	12×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-nucleosome, 30 bp upstream	9eh0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3;	25-335	100.0	9×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-SETD2-FACT nucleosome upstream	9eh2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q08945; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q96ST2; Q9BYW2; Q9GZS3; Q9Y5B9;	25-335	100.0	9×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-nucleosome, bp +27	9egy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q96ST2; Q9GZS3;	25-335	100.0	9×ZN; 1×MG;
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RNA polymerase II-DSIF-SPT6-PAF1c-TFIIS-IWS1-hexasome, bp +27	9egx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A310TTQ1; A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D0TE17; A0A8D1AQR7; A0A8W4F9W9; O00267; P02281; P06897; P23193; P60899; P62799; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q96ST2; Q9GZS3;	25-335	100.0	9×ZN; 1×MG;
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Structure of human Paf1 and Leo1 complex	4m6t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	170-259	92.22	1×SAM;
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The Structure of Human PAF1/CTR9 complex	5zyq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	57-109	100.0
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	4m6t.1.A	monomer	0.68	170-257		94.32
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

3 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
Isoform 2	4m6t.1.A	monomer	0.69	160-225	89.39
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Isoform 3	4m6t.1.A	monomer	0.68	160-247	94.32
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Isoform 3	6ted.1.T	monomer	0.50	15-325	98.96
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Q8N7H5 (PAF1_HUMAN) Homo sapiens (Human)

RNA polymerase II-associated factor 1 homolog UniProtKBInterProSTRINGInteractive Modelling

Available Structures

14 Experimental Structures

1 SWISS-MODEL model

3 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

RNA polymerase II-associated factor 1 homolog UniProtKB InterPro STRING Interactive Modelling