Q8N7H5 | SWISS-MODEL Repository

Q8N7H5 (PAF1_HUMAN) Homo sapiens (Human)

RNA polymerase II-associated factor 1 homolog UniProtKB InterPro STRING Interactive Modelling

531 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3)

It is possible new templates exist for this target since these models were created.

Available Structures

8 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4)	7opc SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A4X1TRS6; A0A4X1VEK9; A0A4X1VM56; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; P62878; Q03468; Q13216; Q13619; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q9GZS3;	25-337	8×ZN; 1×MG;
Assess
Pol II-CSB-CSA-DDB1-UVSSA-PAF-SPT6 (Structure 3)	7oop SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; Q03468; Q13216; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q9GZS3;	25-337	8×ZN; 1×MG;
Assess
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 5)	7opd SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; P11414; P60899; P62878; Q03468; Q13216; Q13619; Q16531; Q2YD98; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q9GZS3;	25-337	8×ZN; 1×MG;
Assess
Structure of complete, activated transcription complex Pol II-DSIF-PAF-SPT6 uncovers allosteric elo…	6ted SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A287ADR4; A0A4X1TRS6; A0A4X1VEK9; A0A4X1VYD0; F1RKE4; I3LCB2; I3LCH3; I3LGP4; I3LSI7; O00267; P60899; P63272; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q9GZS3;	25-335	9×ZN; 1×MG;
Assess
Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome	7unc SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q9GZS3;	25-335	8×ZN; 1×MG;
Assess
Pol II-DSIF-SPT6-PAF1c-TFIIS-nucleosome complex (stalled at +38)	7und SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer A0A481DF93; A0A4X1TRS6; A0A4X1TVZ5; A0A4X1VEK9; A0A4X1VKG7; A0A4X1VTX4; A0A7M4DUC2; A0A8D1GCS3; O00267; P02281; P23193; P62799; P63272; P84233; Q6AZJ8; Q6P1J9; Q6PD62; Q7KZ85; Q8WVC0; Q92541; Q9GZS3;	25-335	9×ZN; 1×MG;
Assess
Structure of human Paf1 and Leo1 complex	4m6t SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	170-259	1×SAM;
Assess
The Structure of Human PAF1/CTR9 complex	5zyq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	monomer	57-109
Assess

1 SWISS-MODEL model

Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
4m6t.1.A	monomer	0.68	170-257		94.32
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

2 SWISS-MODEL models built on isoform sequence

Template	Isoform	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	4m6t.1.A	monomer	0.70	160-225		89.39
Assess
Isoform 3	4m6t.1.A	monomer	0.68	160-247		94.32
Assess

Alignments