Q98803 (POLG_YEFVI) Yellow fever virus (isolate Ivory Coast/85-82H/1982) (YFV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3411 aa; Sequence (Fasta)

Molecule Processing
Capsid protein C
Protein prM
Peptide pr
Small envelope protein M
Envelope protein E
Non-structural protein 1
Non-structural protein 2A
Non-structural protein 2A-alpha
Serine protease subunit NS2B
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
RNA-directed RNA polymerase NS5

Sequence Features

 1537Charge relay system; for serine protease NS3 activity
 1561Charge relay system; for serine protease NS3 activity
 1622Charge relay system; for serine protease NS3 activity
 2567For 2'-O-MTase activity
 2652For 2'-O-MTase activity
 2688For 2'-O-MTase activity
 2724For 2'-O-MTase activity
 2945Zinc 1
 2949Zinc 1; via tele nitrogen
 2954Zinc 1
 2957Zinc 1
 3222Zinc 2; via tele nitrogen
 3238Zinc 2
 3357Zinc 2
 1945Involved in NS3 ATPase and RTPase activities
 1948Involved in NS3 ATPase and RTPase activities
 2519mRNA cap binding
 2522mRNA cap binding; via carbonyl oxygen
 2523mRNA cap binding
 2525mRNA cap binding; via carbonyl oxygen
 2530mRNA cap binding
 2534mRNA cap binding
 2567Essential for 2'-O-methyltransferase activity
 2652Essential for 2'-O-methyltransferase and N-7 methyltransferase activity
 2656mRNA cap binding
 2688Essential for 2'-O-methyltransferase activity
 2719mRNA cap binding
 2721mRNA cap binding
 2724Essential for 2'-O-methyltransferase activity
 105-125Helical
 245-265Helical
 271-285Helical
 731-751Helical
 758-778Helical
 1133-1153Helical
 1202-1222Helical
 1288-1308Helical
 1356-1376Helical
 1379-1399Helical
 1457-1477Helical
 2158-2178Helical
 2187-2207Helical
 2210-2230Helical
 2242-2262Helical; Note=Signal for NS4B
 2294-2314Helical
 2361-2380Helical
 2422-2442Helical
 2446-2466Helical
 1682-1689ATP
 101-102Cleavage; by viral protease NS3
 121-122Cleavage; by host signal peptidase
 210-211Cleavage; by host furin
 285-286Cleavage; by host signal peptidase
 778-779Cleavage; by host signal peptidase
 1130-1131Cleavage; by host
 1354-1355Cleavage; by viral protease NS3
 1484-1485Cleavage; by autolysis
 2107-2108Cleavage; by autolysis
 2233-2234Cleavage; by viral protease NS3
 2256-2257Cleavage; by host signal peptidase
 2506-2507Cleavage; by viral protease NS3
 288-315
 345-406
 345-401
 359-390
 377-406
 377-401
 467-568
 585-615
 782-793
 833-921
 957-1002
 1058-1107
 1069-1091
 1090-1094
 5-118Flavivirus capsid protein C
IPR001122PF01003
 126-209Flavivirus polyprotein propeptide
IPR002535PF01570
 212-285Envelope glycoprotein M, flavivirus
IPR000069PF01004
 287-579Flavivirus glycoprotein central and dimerisation domain
IPR011998PF00869
 581-676Flavivirus glycoprotein E, immunoglobulin-like domain
IPR027287PF02832
 780-1133Flavivirus non-structural protein NS1
IPR001157PF00948
 1139-1323Flavivirus non-structural protein NS2A
IPR000752PF01005
 1358-1484Flavivirus non-structural protein NS2B
IPR000487PF01002
 1503-1655Flavivirus NS3, petidase S7
IPR001850PF00949
 1673-1818DEAD box, Flavivirus
IPR011492PF07652
 2111-2254Flavivirus non-structural protein NS4A
IPR000404PF01350
 2257-2500Flavivirus non-structural protein NS4B
IPR001528PF01349
 2561-2729Ribosomal RNA methyltransferase FtsJ domain
IPR002877PF01728
 2758-3402RNA-directed RNA polymerase, flavivirus
IPR000208PF00972

Sequence Alignments

Envelope protein E 286-778; PRO_0000261475

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer GOL;SO4;-1.156epk.1.A286-677
99.49
monomer -1.566ivz.1.A287-677
97.72

Serine protease NS3 1485-2107; PRO_0000261480

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer MN;-1.082whx.1.A1507-2107
50.41
monomer -2.072wzq.1.A1506-2107
50.32

RNA-directed RNA polymerase NS5 2507-3411; PRO_0000261484

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;SAH;-1.226qsn.2.A2512-3400
97.24
monomer ZN;-2.685dto.1.A2511-3393
60.25