Q99IB8 (POLG_HCVJF) Hepatitis C virus genotype 2a (isolate JFH-1) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

3033 aa; Sequence (Fasta)

Molecule Processing
Core protein p21
Core protein p19
Envelope glycoprotein E1
Envelope glycoprotein E2
p7
Protease NS2-3
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
Non-structural protein 5A
RNA-directed RNA polymerase

Sequence Features

 956For protease NS2-3 activity; shared with dimeric partner
 976For protease NS2-3 activity; shared with dimeric partner
 997For protease NS2-3 activity; shared with dimeric partner
 1087Charge relay system; for serine protease NS3 activity
 1111Charge relay system; for serine protease NS3 activity
 1169Charge relay system; for serine protease NS3 activity
 1127Zinc
 1129Zinc
 1175Zinc
 1179Zinc
 2015Zinc
 2033Zinc
 2035Zinc
 2056Zinc
 169-189Helical
 359-379Helical
 730-750Helical
 762-782Helical
 787-807Helical
 818-838Helical
 886-906Helical
 933-953Helical
 1662-1682Helical
 1810-1830Helical
 1833-1853Helical
 1855-1875Helical
 1886-1906Helical
 1977-2006
 3013-3033Helical
 1234-1241ATP
 177-178Cleavage; by host signal peptidase
 191-192Cleavage; by host signal peptidase
 383-384Cleavage; by host signal peptidase
 750-751Cleavage; by host signal peptidase
 813-814Cleavage; by host signal peptidase
 1030-1031Cleavage; by protease NS2-3
 1661-1662Cleavage; by serine protease NS3
 1715-1716Cleavage; by serine protease NS3
 1976-1977Cleavage; by serine protease NS3
 2442-2443Cleavage; by serine protease NS3
 2118-2166
 2-115Hepatitis C virus core protein, N-terminal
IPR002522PF01543
 116-190Hepatitis C virus core protein, C-terminal
IPR002521PF01542
 193-382Hepatitis C virus envelope glycoprotein E1
IPR002519PF01539
 387-733Hepatitis C virus non-structural protein E2/NS1
IPR002531PF01560
 818-1009Hepatitis C virus non-structural protein NS2
IPR002518PF01538
 1060-1206Peptidase S29, hepatitis C virus NS3 protease
IPR004109PF02907
 1295-1359DEAD box, Flavivirus
IPR011492PF07652
 1662-1715Hepatitis C virus non-structural protein NS4a
IPR000745PF01006
 1733-1925Hepatitis C virus non-structural protein NS4b
IPR001490PF01001
 1978-1999Hepatitis C virus non-structural 5a protein
IPR002868PF01506
 2010-2070NS5A domain 1a
IPR013192PF08300
 2072-2172Hepatitis C virus non-structural 5a, 1B domain
IPR013193PF08301
 2184-2406Hepatitus C virus, NS5a, C-terminal
IPR024350PF12941
 2445-2955RNA dependent RNA polymerase, hepatitis C virus
IPR002166PF00998

Sequence Alignments

Envelope glycoprotein E2 384-750; PRO_0000045596

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Structure of the Hepatitis C virus strain JFH1 glycoprotein E2 antigenic region 532-540 bound to th… Heteromer
5npj 534-542
s34r Structuremonomer 2kzq 684-719
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer BR;-1.176mei.1.A410-649
72.52

Serine protease NS3 1031-1661; PRO_0000045599

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer ZN;MG;-0.055wdx.1.A1031-1661
99.84

Non-structural protein 4B 1716-1976; PRO_0000045601

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
NMR structure of HCV Non-structural protein AB, NS4B(1-40)monomer 2lvg 1716-1755

Non-structural protein 5A 1977-2442; PRO_0000045602

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Functional and structural studies of MOBKL1B, a Salvador/Warts/Hippo tumor suppressor pathway, in H… Heteromer
Q9H8S9;
ZN;4j1v 2284-2299
NMR Structure of NS5A-D2 (JFH1) peptide (304-323)monomer 6ht4 2280-2299

RNA-directed RNA polymerase 2443-3033; PRO_0000045603

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
HCV-JFH1 NS5B T385A mutanthomo-2-mer 14×PO4;2xym 2443-3005
CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS GENOTYPE 2A STRAIN JFH1 NS5B RNA-DEPENDENT RNA POLYMERAS…monomer J6D;SCN;2PE;GOL;5qj0 2443-3011
Crystal structure of the NS5B polymerase from Hepatitis C Virus (HCV) strain JFH1monomer PO4;3i5k 2443-3007
HCV-JFH1 NS5B POLYMERASE STRUCTURE AT 1.8 ANGSTROMmonomer PO4;4aep 2443-3005
HCV-JFH1 NS5B polymerase structure at 1.9 angstrommonomer PO4;2xxd 2443-3005
CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS GENOTYPE 2A STRAIN JFH1 L30S NS5B RNA-DEPENDENT RNA POLY…monomer 7NG;SO4;PE5;PG4;5twm 2443-3005
HCV-JFH1 NS5B POLYMERASE STRUCTURE AT 2.4 ANGSTROM in a primitive orthorhombic space groupmonomer PO4;4aex 2443-3005
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS I…monomer MN;CL;ADP;PG6;B3P;PG4;EDO;4wtj 2443-2996
Crystal structure of HCV polymerase NS5b genotype 2a JFH-1 isolate with the S15G, C223H, V321I resi…monomer MES;GOL;PG6;CL;4obc 2443-2995
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS I…monomer MN;CL;UDP;PG6;B3P;4wtl 2443-2994
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS I…monomer MN;CL;UDP;4wtm 2443-2994
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS I…monomer MN;CL;CDP;PG6;B3P;EDO;4wtk 2443-2994
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS I…monomer MN;CL;GDP;B3P;4wti 2443-2994
Apo crystal structure of HCV NS5B genotype 2A JFH-1 isolate with beta hairpin loop deletionmonomer SO4;EDO;4e76 2443-2993
APO CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH E86Q E87Q S15G C223H V321I AND DEL…monomer CL;EPE;PG6;4wt9 2443-2993
CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS GENOTYPE 2A STRAIN JFH1 L30S NS5B RNA-DEPENDENT RNA POLY…monomer J6J; 11×SO4;GOL;PG4;5qj1 2443-2989
Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairp…monomer 4e78 2443-2987
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS A…monomer MN;CL;5GS;4wtf 2443-2985
Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairp…monomer 4e7a 2443-2985
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS A…monomer MN;CL;UDP;4wta 2443-2984
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS A…monomer MN;CL;GDP;4wte 2443-2984
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS A…monomer MN;6GS;CL;4wtg 2443-2984
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS A…monomer MN;ADP;CL;4wtd 2443-2983
CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS A…monomer MN;CL;CDP;4wtc 2443-2983
Crystal structure of HCV NS5B genotype 2A JFH-1 isolate with S15G E86Q E87Q C223H V321I mutations a…monomer MN;8B4;CL;5uj2 2443-2983