Q9BY66 (KDM5D_HUMAN) Homo sapiens (Human)

Lysine-specific demethylase 5D UniProtKBInterProInteractive Modelling

1539 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; ) Identical sequences: Homo sapiens: A0A384MR42

Sequence Features

 504Iron; catalytic
 506Iron; catalytic
 592Iron; catalytic
 1186V -> L (in dbSNP:rs1050807) VAR_032991 dbSNP
 316-362PHD-type 1
 697-749C5HC2
 1174-1235PHD-type 2
 15-48JmjN domain
IPR003349PF02375
 82-165ARID DNA-binding domain
IPR001606PF01388
 316-362Zinc finger, PHD-finger
IPR019787PF00628
 491-607JmjC domain
IPR003347PF02373
 697-749Zinc finger, C5HC2-type
IPR004198PF02928
 762-1087Lysine-specific demethylase-like domain
IPR013637PF08429

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Solution structure of the ARID domain of JARID1D proteinmonomer 2yqe79-171
Solution structure of the PHD domain in SmcY proteinmonomer ZN;2e6r306-384

Homology models

Oligo-stateLigandsQMEANTemplateRangeSeq id (%)DownloadAssess
monomer -4.375k4l.1.A7-806
64.24
monomer -3.315j1i.1.A957-1069
20.00
monomer -4.633iee.1.A838-994
14.07

Homology models built on isoform sequence

Isoform #Oligo-stateLigandsQMEANTemplateRangeSeq id (%)ReportDownloadAssess
2monomerNI;-4.195k4l.1.A7-749
64.06
3monomerZN;-3.352e6r.1.A306-384
100.00
2monomer-4.522kwj.1.B241-304
45.31
3monomerNI;-3.996ets.1.A419-681
36.40
2monomer-3.681wlx.1.A686-792
12.62
2monomer-2.926m3p.1.B685-941
15.25
2monomerZN;-2.892miq.1.A239-312
48.65
3monomer-4.734uxv.1.A791-1132
11.71
2monomer-4.623iee.1.A781-937
14.07
2monomer-3.435j1i.1.A900-1012
18.82