Q9UGL1 (KDM5B_HUMAN) Homo sapiens (Human)

Lysine-specific demethylase 5B UniProtKBInterProSTRINGInteractive Modelling

1544 aa; Sequence (Fasta) ; (Isoform 2)

Available Structures

56 Experimental Structures

DescriptionPDB IDOligo-stateRangeLigands
Crystal structure of human KDM5B in complex with compound 34g
6h52
monomer26-755
2×ZN; 2×MN; 7×DMS; 1×PO4; 1×FQN; 4×EDO;
Assess
Crystal structure of human KDM5B in complex with compound 16a
6h4z
monomer26-755
2×ZN; 3×MN; 2×FQ5; 9×DMS; 6×EDO;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with malate
5fz8
monomer26-754
2×ZN; 1×LMR; 1×MN; 1×EPE; 9×EDO; 1×CL; 1×PO4;
Assess
Crystal structure of KDM5B in complex with KDOPZ29a
6eiu
monomer26-754
2×ZN; 2×MN; 1×B6T; 7×DMS; 5×EDO;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with MC3962
5fzf
monomer26-754
2×ZN; 2×UUN; 1×MN; 1×CL; 17×EDO; 4×DMS; 2×PO4;
Assess
Crystal structure of the catalytic domain of human PLU1 (JARID1B).
5a3p
monomer26-754
2×ZN; 3×MN; 1×EPE; 11×EDO;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with MC3960
5fze
monomer26-754
2×ZN; 1×H0X; 2×MN; 1×CL; 13×EDO; 2×DMS; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 3-Amino-4-me…
5fyu
monomer26-754
1×ZN; 2×MN; 1×PO4; 13×EDO; 3×DMS; 1×BY4; 1×CL;
Assess
Crystal structure of KDM5B in complex with KDOPZ000049a.
6ej0
monomer26-754
1×ZN; 2×MN; 2×EDO; 5×DMS; 1×B7K;
Assess
Crystal structure of KDM5B in complex with KDOPZ48a.
6ej1
monomer26-754
1×ZN; 2×MN; 3×DMS; 1×B7Q; 2×EDO;
Assess
Crystal structure of KDM5B in complex with S49365a.
6ein
monomer26-754
1×B7Z; 1×ZN; 2×MN; 4×EDO;
Assess
Crystal structure of human JARID1B in complex with 2-oxoglutarate.
5fup
monomer26-754
2×ZN; 2×MN; 1×EPE; 1×CL; 1×AKG; 9×EDO;
Assess
Crystal structure of KDM5B in complex with KDOPZ000034a.
6eiy
monomer26-754
1×ZN; 2×MN; 3×EDO; 3×DMS; 1×B6W;
Assess
Crystal structure of human KDM5B in complex with compound 34a
6h50
monomer26-754
2×ZN; 2×MN; 3×EDO; 1×PO4; 1×FO2; 5×DMS;
Assess
Crystal structure of human KDM5B in complex with compound 34f
6h51
monomer26-754
2×ZN; 2×MN; 5×DMS; 5×EDO; 1×PO4; 1×FQK;
Assess
Crystal structure of KDM5B in complex with 5-(1H-tetrazol-5-yl)quinolin-8-ol
6rbi
monomer26-754
2×ZN; 1×MN; 1×PO4; 4×EDO; 1×JX8; 2×NA;
Assess
Crystal structure of human JARID1B in complex with S40563a
5lw9
monomer26-754
1×ZN; 2×MN; 2×EDO; 3×DMS; 1×5UJ;
Assess
Crystal structure of human JARID1B in complex with CCT363901
5fpl
monomer26-754
1×ZN; 2×MN; 1×QAY; 2×EDO; 1×DMS;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 2-(2-oxo-2,3…
5fyz
monomer26-753
2×ZN; 1×NYK; 1×MN; 1×PO4; 12×EDO; 3×DMS; 1×NA;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment (5-fluoro-2-…
5fyt
monomer26-753
2×ZN; 1×MN; 1×WQS; 18×EDO; 3×DMS; 1×PO4; 1×CL;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with oxaloacetate
5fyv
monomer26-753
1×ZN; 1×MN; 1×EPE; 17×EDO; 1×OAA; 1×CL; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with MC1648
5fyb
monomer26-753
2×ZN; 4×MN; 2×77J; 16×EDO; 4×DMS;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with D-2-hydroxyglutarate
5fys
monomer26-753
2×ZN; 2×MN; 1×EPE; 14×EDO; 1×2HG; 1×CL;
Assess
Crystal structure of human PLU-1 (JARID1B) in complex with KDM5-C49 (2-(((2-((2-(dimethylamino)ethy…
5a3t
monomer26-753
1×ZN; 1×EPE; 1×MMK; 1×NI; 7×EDO; 1×MN;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with MC3095
5fzi
monomer26-753
1×ZN; 2×MN; 18×EDO; 3×DMS; 1×FIG; 1×PO4; 1×CL;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with MC3948
5fzg
monomer26-753
2×ZN; 1×CL; 1×MN; 1×EPE; 9×EDO; 2×DMS; 2×7IA; 1×PO4;
Assess
Crystal structure of human PLU-1 (JARID1B) in complex with Pyridine-2, 6-dicarboxylic Acid (PDCA)
5a3w
monomer26-753
2×ZN; 1×NA; 1×PD2; 1×MN; 1×PO4; 1×EPE; 3×EDO;
Assess
Crystal structure of human PLU-1 (JARID1B) in complex with KDOAM25a
5a3n
monomer26-753
2×ZN; 3×MN; 1×LQT; 1×DMS; 1×PO4; 1×EPE; 6×EDO;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with pyruvate
5fy9
monomer26-753
3×MN; 2×ZN; 1×EPE; 9×EDO; 1×PYR;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 4,5-d…
5fzc
monomer26-753
2×ZN; 3×DMS; 1×MN; 1×EPE; 10×EDO; 1×D8S; 1×CL; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment N,3-dimethyl…
5fzk
monomer26-753
1×ZN; 1×CL; 1×MN; 9×EDO; 1×NRW; 1×PO4; 2×DMS;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with L-2-hydroxyglutarate
5fzd
monomer26-753
2×ZN; 1×MN; 1×EPE; 13×EDO; 1×S2G; 1×CL; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment thien…
5fz9
monomer26-753
2×ZN; 3×DMS; 1×MN; 1×EPE; 5×EDO; 1×CL; 3×NUK; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment (3R)-1-[(3-p…
5fz4
monomer26-753
2×ZN; 1×P6B; 1×MN; 1×CL; 10×EDO; 3×DMS; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 4,5-d…
5fzh
monomer26-753
1×ZN; 3×DMS; 2×MN; 1×EPE; 9×EDO; 1×CL; 1×0TI;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 2-piperidin-…
5fza
monomer26-753
2×ZN; 1×CL; 1×MN; 1×80Q; 10×EDO; 4×DMS;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with succinate
5fy4
monomer26-753
1×ZN; 5×MN; 7×EDO; 1×FUM;
Assess
Crystal structure of the catalytic domain of PLU1 in complex with N-oxalylglycine.
5a1f
monomer26-753
2×ZN; 1×OGA; 2×MN; 1×PO4; 1×EPE; 7×EDO;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 3-pyr…
5fyy
monomer26-753
2×ZN; 1×CL; 1×MN; 1×N6Y; 18×EDO; 4×DMS; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 4-Pyr…
5fzb
monomer26-753
2×ZN; 2×DMS; 1×MN; 1×EPE; 8×EDO; 1×CL; 1×YS6; 2×PO4;
Assess
Crystal structure of human JARID1B in complex with GSKJ1
5fpu
monomer26-753
2×ZN; 1×K0I; 2×MN; 2×PO4; 1×EPE; 5×EDO;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment ethyl…
5fz7
monomer26-753
2×ZN; 4×DMS; 1×MN; 1×PO4; 8×EDO; 1×CL; 1×WGT;
Assess
Crystal structure of human JARID1B in complex with GSK467
5fun
monomer26-753
2×ZN; 1×GZA; 1×MN; 1×NA; 1×PO4; 1×EPE; 4×EDO;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment N0585…
5fz6
monomer26-753
2×ZN; 3×DMS; 1×MN; 1×EPE; 10×EDO; 1×MN1; 1×CL; 1×PO4;
Assess
Crystal structure of human JARID1B construct c2 in complex with N- Oxalylglycine.
5fv3
monomer26-753
1×ZN; 2×DMS; 2×MN; 1×EPE; 9×EDO; 1×CL; 1×OGA;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 2,4-d…
5fz1
monomer26-753
2×ZN; 3×DMS; 1×MN; 1×PO4; 12×EDO; 1×W77;
Assess
Crystal structure of human JARID1B in complex with S40650a
5lwb
monomer26-753
1×ZN; 3×MN; 4×EDO; 5×DMS; 1×79H;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 2,5-dichloro-N-(pyridin-…
5fz0
monomer26-753
2×ZN; 2×DMS; 1×MN; 1×EPE; 6×EDO; 1×CL; 1×DJ6; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with fumarate
5fy5
monomer26-753
1×ZN; 4×MN; 1×EPE; 8×EDO; 1×FUM;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 5-(2-fluorop…
5fzm
monomer26-753
1×ZN; 3×DMS; 1×MN; 10×EDO; 1×P60; 1×CL; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 3,6-D…
5fz3
monomer26-753
2×ZN; 5×DMS; 1×MN; 1×7SI; 8×EDO; 1×CL; 1×PO4;
Assess
Crystal structure of the catalytic domain of human JARID1B in complex with 3D fragment 3-methyl-N-p…
5fzl
monomer26-753
1×ZN; 1×DMS; 1×MN; 10×EDO; 1×UOI; 1×CL; 1×PO4;
Assess
Crystal structure of KDM5B in complex with S49195a.
6ek6
monomer347-754
1×ZN; 1×MN; 1×NI; 1×90V; 4×DMS; 7×EDO;
Assess
Solution NMR structure of PHD type Zinc finger domain of Lysine-specific demethylase 5B (PLU-1/JARI…
2ma5
monomer1487-1544
2×ZN;
Assess
NMR Structure of KDM5B PHD1 finger in complex with H3K4me0(1-10aa)
2mnz
monomer306-360
2×ZN;
Assess
NMR Structure of KDM5B PHD1 finger
2mny
monomer306-360
2×ZN;
Assess

4 SWISS-MODEL models

TemplateOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
2ma5.1.Amonomer0.651487-1544
2×ZN;100.00
Assess
5k4l.1.Amonomer0.6131-801
1×NI; 1×ZN; 1×6QN;64.69
Assess
2mny.1.Amonomer0.57306-360
2×ZN;100.00
Assess
6nz1.1.Amonomer0.51836-916
12.35
Assess

2 SWISS-MODEL models built on isoform sequence

TemplateIsoformOligo-stateQMEANDisCoRangeLigandsTrg-Tpl Seq id (%)
Isoform 22ma5.1.Amonomer0.651523-1580
2×ZN;100.00
Assess
Isoform 25k4l.1.Amonomer0.6231-837
1×NI; 1×ZN; 1×6QN;64.95
Assess