Q9Y4P1 | SWISS-MODEL Repository

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Q9Y4P1 (ATG4B_HUMAN) Homo sapiens (Human)

Cysteine protease ATG4B UniProtKB InterPro STRING Interactive Modelling

393 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; Isoform 4; Isoform 6)

It is possible new templates exist for this target since these models were created.

Available Structures

7 Experimental Structures

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	The crystal structure of human Atg4B- LC3(1-124) complex	2z0e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q62625;	4-353	99.68
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	The crystal structure of human Atg4B- LC3(1-120) complex	2z0d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q62625;	5-353	99.67
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	The crystal structure of human Atg4B(C74S)- LC3(1-124) complex	2zzp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q62625;	6-353	99.68
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	GABARAP-L1 ATG4B LIR Complex	5lxi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q9H0R8;	384-393	100	3×MG; 2×PGE; 1×EDO; 2×PER; 1×PEG;
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	GABARAP-L1 ATG4B LIR Complex	5lxh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q9H0R8;	384-393	100	1×SO4;
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	The crystal structure of human Atg4B	2cy7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	5-377	99.7
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	Structure of human Atg4b	2d1i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	10-373	99.7
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	2cy7.1.A	monomer	0.84	5-377		99.75
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

4 SWISS-MODEL models built on isoform sequence

	Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	Isoform 2	2cy7.1.A	monomer	0.80	93-460		99.19
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	Isoform 3	2d1i.1.A	monomer	0.81	1-266		92.86
	Download ModelCIF format PDB format Model report Compare Structure Assessment
	Isoform 4	2d1i.1.A	monomer	0.81	1-311		99.37
	Download ModelCIF format PDB format Model report Compare Structure Assessment
	Isoform 6	2cy7.1.A	monomer	0.85	5-362		99.72
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Alignments