Q9Y4Y9 | SWISS-MODEL Repository

Q9Y4Y9 (LSM5_HUMAN) Homo sapiens (Human)

U6 snRNA-associated Sm-like protein LSm5 UniProtKB InterPro STRING Interactive Modelling

91 aa; Sequence (Fasta) ; (Isoform 2); 196 identical sequences

It is possible new templates exist for this target since these models were created.

Available Structures

13 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex	8r09 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O43447; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q15029; Q15393; Q15427; Q15428; Q15459; Q53GS9; Q6P2Q9; Q7RTV0; Q8WWY3; Q96DI7; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	13-88	100
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Cryo-EM structure of human exon-defined spliceosome in the late pre-B state.	8h6e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q13523; Q15029; Q15393; Q15427; Q15428; Q15459; Q53GS9; Q6P2Q9; Q7RTV0; Q8WVK2; Q8WWY3; Q96DI7; Q9BTD8; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	10-85	100.0	1×IHP; 1×MG; 1×GTP; 1×ZN;
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Cryo-EM structure of the cross-exon pre-B+5'ss complex	8r0a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q13523; Q15029; Q15393; Q15427; Q15428; Q15459; Q53GS9; Q6P2Q9; Q7RTV0; Q8WVK2; Q8WWY3; Q96DI7; Q9BTD8; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	13-88	100
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Human pre-Bact-1 spliceosome	7abg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O14776; O43660; O75533; O75643; O95777; P08579; P09661; P14678; P41223; P52298; P55081; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; Q07955; Q09161; Q12874; Q13435; Q13573; Q15029; Q15393; Q15427; Q15428; Q15459; Q6P2Q9; Q7RTV0; Q8IYB3; Q8NAV1; Q8TAD8; Q96DI7; Q96NC0; Q99459; Q9BWJ5; Q9BZL1; Q9NW64; Q9P013; Q9UK45; Q9Y2W2; Q9Y333; Q9Y3B4; Q9Y4Z0;	10-85	100	1×IHP; 1×GTP; 1×MG; 1×GTG;
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Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex)	5o9z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O43447; O75533; O75554; O75643; O94906; O95777; P08579; P09661; P14678; P55081; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q13123; Q15029; Q15393; Q2TAY7; Q6P2Q9; Q7RTV0; Q8NAV1; Q8WWY3; Q96DI7; Q96NC0; Q9BWJ5; Q9UK45; Q9Y333; Q9Y4Z0;	10-85	100
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Cryo-EM structure of the cross-exon pre-B+ATP complex	8r0b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O43447; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q15029; Q15393; Q15427; Q15428; Q15459; Q53GS9; Q6P2Q9; Q7RTV0; Q8WWY3; Q96DI7; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	13-88	100
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Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution.	6qw6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O75643; O94906; O95777; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q15029; Q53GS9; Q6P2Q9; Q8WVK2; Q8WWY3; Q96DI7; Q9BTD8; Q9BUQ8; Q9UK45; Q9Y333; Q9Y4Z0;	13-88	100	1×IHP; 1×MG; 1×GTP; 1×ZN;
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Cryo-EM structure of the cross-exon pre-B+5'ssLNG+ATPyS complex	8rm5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O43447; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q15029; Q15393; Q15427; Q15428; Q15459; Q53GS9; Q6P2Q9; Q7RTV0; Q8WWY3; Q96DI7; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	13-88	100
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Cryo-EM structure of the cross-exon pre-B complex	8qxd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q13523; Q15029; Q15393; Q15427; Q15428; Q15459; Q53GS9; Q6P2Q9; Q7RTV0; Q8WVK2; Q8WWY3; Q96DI7; Q9BTD8; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	13-88	100
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Cryo-EM structure of human exon-defined spliceosome in the early B state.	8h6l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O43447; O75533; O75554; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q15029; Q15393; Q15427; Q15428; Q15459; Q2TAY7; Q6P2Q9; Q7RTV0; Q8WWY3; Q96DI7; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	10-85	100.0	1×IHP; 1×GTP; 1×MG; 1×ZN;
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Cryo-EM structure of human exon-defined spliceosome in the mature pre-B state.	8h6j PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43290; O43395; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q13523; Q15029; Q15393; Q15427; Q15428; Q15459; Q53GS9; Q6P2Q9; Q7RTV0; Q8WVK2; Q8WWY3; Q96DI7; Q9BTD8; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	10-85	100.0	1×IHP; 1×MG; 1×GTP; 1×ZN;
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3D structure determination of the humanU4/U6.U5 tri-snRNP complex	3jcr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43395; O75643; O94906; O95777; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q15029; Q53GS9; Q6P2Q9; Q8WWY3; Q96DI7; Q9BUQ8; Q9UK45; Q9Y333; Q9Y4Z0;	10-85	100
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The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex)	6ah0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O43172; O43395; O75533; O75643; O94906; O95777; P08579; P09661; P14678; P55769; P62304; P62306; P62308; P62310; P62312; P62314; P62316; P62318; P83876; Q12874; Q13435; Q15029; Q15393; Q15427; Q15428; Q15459; Q53GS9; Q6P2Q9; Q7RTV0; Q8WWY3; Q96DI7; Q9BUQ8; Q9BWJ5; Q9UK45; Q9Y333; Q9Y3B4; Q9Y4Z0;	10-85	100.0	1×IHP; 1×GTP; 1×MG;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	6ah0.1.O	monomer	0.84	10-85		100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

1 SWISS-MODEL model built on isoform sequence

	Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	Isoform 2	6ah0.1.O	monomer	0.82	1-56		100.00
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Q9Y4Y9 (LSM5_HUMAN) Homo sapiens (Human)

U6 snRNA-associated Sm-like protein LSm5 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

13 Experimental Structures

1 SWISS-MODEL model

1 SWISS-MODEL model built on isoform sequence

Alignments

Background

Resolution

U6 snRNA-associated Sm-like protein LSm5 UniProtKB InterPro STRING Interactive Modelling