Q9Y5A9 | SWISS-MODEL Repository

Q9Y5A9 (YTHD2_HUMAN) Homo sapiens (Human)

YTH domain-containing family protein 2 UniProtKB Protein Atlas InterPro STRING Interactive Modelling

579 aa; Sequence (Fasta) ; (Isoform 2); 13 identical sequences

It is possible new templates exist for this target since these models were created.

Available Structures

23 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of N6-methyladenosine RNA reader YTHDF2	4wqn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	398-548	100	1×GOL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DC1_006	7z54 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-549	100	4×SO4; 2×CL; 1×OYT; 2×GOL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DC1_018	7z8w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-549	100	1×SO4; 1×IHR; 2×GOL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 in complex with m1A	7a1v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-549	100	1×M1A; 4×SO4;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DC1_015	7r5l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	1×I4S; 5×SO4;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DC1_008	7z5m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	3×SO4; 2×CL; 1×5ZK; 2×GOL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DF_029	7r5w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	4×SO4; 1×I5Z; 1×CL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DF_027	7yx6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	2×SO4; 1×I6R; 1×GOL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DC1_003	7z7b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	5×SO4; 3×CL; 1×OYK;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DF_028	7z4u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	2×SO4; 1×CL; 1×FIQ;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound ZA_143	7yxe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	1×I82; 2×SO4;
Download Compare Structure Assessment
Crystal structure of YTHDF2 YTH domain in complex with m6A RNA	7z26 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	1×SO4;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DF_024	7z92 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	2×SO4; 1×IGT;
Download Compare Structure Assessment
Crystal structure of YTHDF2 in complex with N6-Methyladenine	7ywb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	4×SO4; 1×N6M; 1×GOL; 1×CL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DC1_005	7z7f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	4×SO4; 1×CL; 1×IF3;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DC1_017	7z8x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	1×IGX; 2×SO4;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DF_022	7z93 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100.0	2×CL; 3×SO4; 1×IHF;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound ZA_166	7z8p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100.0	3×SO4; 1×IFZ;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DF_012	7r5f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	4×SO4; 1×CL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 with compound YLI_DF_042	7zg4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	3×SO4; 1×IQL;
Download Compare Structure Assessment
Crystal structure of YTHDF2 in complex with m6Am	7bik PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	2×GOL; 4×SO4;
Download Compare Structure Assessment
Structure of YTH-YTHDF2 in complex with m6A	4rdn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	1×6MD; 2×SO4;
Download Compare Structure Assessment
Structure of YTH-YTHDF2 in the free state	4rdo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	408-548	100	1×SO4;
Download Compare Structure Assessment

1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	4rci.1.A	monomer	0.81	386-579		85.28
	Download Model report Compare Structure Assessment

	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

1 SWISS-MODEL model built on isoform sequence

	Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	Isoform 2	4rci.1.A	monomer	0.81	336-529		85.28
	Download ModelCIF format PDB format Model report Compare Structure Assessment

Q9Y5A9 (YTHD2_HUMAN) Homo sapiens (Human)

YTH domain-containing family protein 2 UniProtKBProtein AtlasInterProSTRINGInteractive Modelling

Available Structures

23 Experimental Structures

1 SWISS-MODEL model

1 SWISS-MODEL model built on isoform sequence

Alignments

Background

Resolution

YTH domain-containing family protein 2 UniProtKB Protein Atlas InterPro STRING Interactive Modelling