Q9Y6K9 (NEMO_HUMAN) Homo sapiens (Human)
NF-kappa-B essential modulator UniProtKBInterProSTRINGInteractive Modelling
419 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3; )
Sequence Features
| 54 | Interchain | ||
| 347 | Interchain | ||
| 57 | E -> K (in IP; shows the same luciferase activity as the control; dbSNP:rs148695964) VAR_026491 dbSNP | ||
| 90 | Missing (in IP; only 46.3% of the activation obtained with the wild-type protein) VAR_026492 | ||
| 113 | D -> N (in dbSNP:rs179363896) VAR_026493 dbSNP | ||
| 123 | R -> W (in IP; shows the same luciferase activity as the control; dbSNP:rs179363895) VAR_026494 dbSNP | ||
| 153 | L -> R (in EDAID1; dbSNP:rs137853328) VAR_026495 dbSNP | ||
| 170 | L -> P (in IP) VAR_072603 | ||
| 173 | R -> G (in IMD33; dbSNP:rs179363866) VAR_031958 dbSNP | ||
| 173 | R -> Q (in IP; dbSNP:rs1057520292) VAR_072604 dbSNP | ||
| 175 | R -> P (in EDAID1; dbSNP:rs179363868) VAR_011320 dbSNP | ||
| 183 | Q -> H (in IP; dbSNP:rs1198984417) VAR_072605 dbSNP | ||
| 227 | L -> P (in EDAID1; dbSNP:rs179363869) VAR_011321 dbSNP | ||
| 288 | A -> G (in EDAID1; dbSNP:rs137853330) VAR_011322 dbSNP | ||
| 311 | D -> N (in EDAID1; abolishes binding to polyubiquitin ('K63'-linked and linear) and greatly impairs tandem ubiquitin binding; dbSNP:rs179363867) VAR_011323 dbSNP | ||
| 314 | A -> P (in IP) VAR_072606 | ||
| 315 | E -> A (in IMD33; greatly impairs tandem ubiquitin binding. Impairs oligomerization, impairs binding of 'Lys- 63'-linked ubiuitin and linear tetra-ubiquitin, impairs TNF-induced NF-kappa-B activation; dbSNP:rs137853331) VAR_031959 dbSNP | ||
| 319 | R -> Q (in IMD33; impairs tandem ubiquitin binding; dbSNP:rs137853332) VAR_031960 dbSNP | ||
| 322 | L -> P (in IP) VAR_072607 | ||
| 323 | A -> P (in IP; diminishes interaction with TRAF6 and polyubiquitination, greatly impairs tandem ubiquitin binding. Impairs oligomerization, greatly impairs binding of 'Lys-63'-linked ubiuitin and linear tetra-ubiquitin, impairs TNF-induced NF-kappa-B activation; dbSNP:rs179363865) VAR_042666 dbSNP | ||
| 406 | D -> V (in EDAID1; dbSNP:rs137853327) VAR_011324 dbSNP | ||
| 407 | M -> V (in IP; impairs binding to ubiquitin; dbSNP:rs137853322) VAR_009182 dbSNP | ||
| 413 | H -> Y (in IP) VAR_072608 | ||
| 417 | C -> F (in EDAID1; dbSNP:rs137853326) VAR_011325 dbSNP | ||
| 417 | C -> R (in EDAID1; loss of sumoylation; dbSNP:rs137853325) VAR_011326 dbSNP | ||
| 417 | C -> Y (in IMD33; dbSNP:rs137853326) VAR_026496 dbSNP | ||
| 389-419 | CCHC NOA-type | ||
| 45-111 | NF-kappa-B essential modulator NEMO, N-terminal IPR021063PF11577 | ||
| 257-344 | NF-kappa-B essential modulator NEMO, CC2-LZ domain IPR032419PF16516 |
Sequence Alignments
Experimental structures
| Description | Oligo-state | Ligands | Structure | Range |
|---|---|---|---|---|
| NEMO/IKKb association domain structure |
Heteromer O14920; | 3brv | ||
| Assess | ||||
| NEMO/IKK association domain structure |
Heteromer O14920; O15111; | 3brt | ||
| Assess | ||||
| Crystal Structure of a vFLIP-IKKgamma complex: Insights into viral activation of the IKK signalosome |
Heteromer Q76RF1; | 3cl3 | ||
| Assess | ||||
| Crystal structure of a vFLIP-IKKgamma stapled peptide dimer |
Heteromer F5HEZ4; P19909; | 5lde | ||
| Assess | ||||
| Structure of NEMO(51-112) with N- and C-terminal coiled-coil adaptors. | homo-2-mer | 6mi3 | ||
| Assess | ||||
| Structure of the I65M mutant of NEMO(51-112) with N- and C-terminal coiled-coil adaptors. | homo-2-mer | 6mi4 | ||
| Assess | ||||
| NEMO CC2-LZ DOMAIN | homo-2-mer | 4bwn | ||
| Assess | ||||
| Crystal structure of Human NEMO CC2_LZ domain | homo-2-mer | 3fx0 | ||
| Assess | ||||
| TBK1 recruitment to cytosol-invading Salmonella induces anti- bacterial autophagy | monomer | 1×ZN; | 5aay | |
| Assess | ||||
| Solution Structure of human NEMO zinc finger | monomer | 1×ZN; | 2jvx | |
| Assess | ||||
| Solution Structure of the EDA-ID-related C417F mutant of human NEMO zinc finger | monomer | 1×ZN; | 2jvy | |
| Assess | ||||
Homology models
| Oligo-state | QMEAN | Template | Range | Seq id (%) | Ligands |
|---|---|---|---|---|---|
| homo-2-mer | -1.86 | 3uf1.1.A | 16.98 | ||
| Assess | |||||
| homo-2-mer | -2.40 | 6mi3.1.A | 72.53 | ||
| Assess | |||||
Homology models built on isoform sequence
| Isoform | Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|---|
| Isoform 2 | homo-2-mer | -1.86 | 3uf1.1.A | 16.98 | ||
| Assess | ||||||
| Isoform 2 | monomer | 0.45 | 3cl3.1.C | 100.00 | ||
| Assess | ||||||
| Isoform 2 | homo-2-mer | -1.90 | 6mi3.1.A | 72.04 | ||
| Assess | ||||||
| Isoform 2 | homo-2-mer | 3.10 | 4bwn.1.A | 98.85 | ||
| Assess | ||||||
| Isoform 3 | monomer | -1.81 | 4rh7.1.A | 11.88 | ||
| Assess | ||||||
| Isoform 3 | homo-3-mer | -1.86 | 4lin.2.A | 12.07 | ||
| Assess | ||||||
| Isoform 3 | homo-2-mer | -1.67 | 6snz.1.A | 18.60 | ||
| Assess | ||||||
| Isoform 3 | monomer | -0.55 | 6f1t.1.U | 17.24 | ||
| Assess | ||||||
| Isoform 3 | homo-2-mer | 3.13 | 6mi3.1.A | 79.75 | ||
| Assess | ||||||
| Isoform 3 | homo-4-mer | -3.58 | 2d3e.1.A | 23.53 | ||
| Assess | ||||||
| Isoform 3 | homo-2-mer | -2.08 | 3o0z.1.A | 21.37 | ||
| Assess | ||||||
| Isoform 3 | monomer | -2.10 | 5cws.1.E | 12.84 | ||
| Assess | ||||||