SMTL ID : 8x95.2 (3 other biounits)

Cryo-EM structure of enterovirus A71 mature virion in complex with Fab h1A6.2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 12 residues within 4Å: Chain A: I.111, D.112, I.113, F.135, F.137, F.155, V.192, M.195, W.203, N.228, M.230, F.233 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.111, A:I.111, A:F.137, A:F.155, A:F.155, A:V.192, A:F.233 Hydrogen bonds: A:D.112, A:N.228 SPH.2: 12 residues within 4Å: Chain E: I.111, D.112, I.113, F.135, F.137, F.155, V.192, M.195, W.203, N.228, M.230, F.233 9 PLIP interactions: 9 interactions with chain E Hydrophobic interactions: E:I.111, E:I.111, E:F.137, E:F.155, E:F.155, E:V.192, E:F.233 Hydrogen bonds: E:D.112, E:N.228 SPH.3: 12 residues within 4Å: Chain I: I.111, D.112, I.113, F.135, F.137, F.155, V.192, M.195, W.203, N.228, M.230, F.233 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:I.111, I:I.111, I:F.137, I:F.155, I:F.155, I:V.192, I:F.233 Hydrogen bonds: I:D.112, I:N.228 SPH.4: 12 residues within 4Å: Chain M: I.111, D.112, I.113, F.135, F.137, F.155, V.192, M.195, W.203, N.228, M.230, F.233 9 PLIP interactions: 9 interactions with chain M Hydrophobic interactions: M:I.111, M:I.111, M:F.137, M:F.155, M:F.155, M:V.192, M:F.233 Hydrogen bonds: M:D.112, M:N.228 SPH.5: 12 residues within 4Å: Chain Q: I.111, D.112, I.113, F.135, F.137, F.155, V.192, M.195, W.203, N.228, M.230, F.233 9 PLIP interactions: 9 interactions with chain Q Hydrophobic interactions: Q:I.111, Q:I.111, Q:F.137, Q:F.155, Q:F.155, Q:V.192, Q:F.233 Hydrogen bonds: Q:D.112, Q:N.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, R. et al., Broadly therapeutic antibody provides cross-serotype protection against enteroviruses via Fc effector functions and by mimicking SCARB2. Nat Microbiol (2024)

Release Date

2024-09-04

Peptides

Capsid protein VP1: AEIMQ
Capsid protein VP2: BFJNR
Capsid protein VP3: CGKOS
Capsid protein VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
B

F
B

J
B

N
B

R
B

C
C

G
C

K
C

O
C

S
C

D
D

H
D

L
D

P
D

T
D

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

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