SMTL ID : 1dzq.1

LECTIN UEA-II COMPLEXED WITH GALACTOSE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: E.126, D.128, D.139, H.144, S.154 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.126, A:D.128, A:D.139, A:H.144 MN.5: 5 residues within 4Å: Chain B: E.126, D.128, D.139, H.144, S.154 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.126, B:D.128, B:D.139, B:H.144 MN.8: 5 residues within 4Å: Chain C: E.126, D.128, D.139, H.144, S.154 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.126, C:D.128, C:D.139, C:H.144 MN.12: 5 residues within 4Å: Chain D: E.126, D.128, D.139, H.144, S.154 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.126, D:D.128, D:D.139, D:H.144

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.128, Y.130, N.136, D.139 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.128, A:D.128, A:Y.130, A:D.139 CA.6: 4 residues within 4Å: Chain B: D.128, Y.130, N.136, D.139 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.128, B:D.128, B:Y.130, B:D.139 CA.9: 4 residues within 4Å: Chain C: D.128, Y.130, N.136, D.139 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.128, C:D.128, C:Y.130, C:D.139 CA.13: 4 residues within 4Å: Chain D: D.128, Y.130, N.136, D.139 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.128, D:D.128, D:Y.130, D:D.139

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: P.100, S.101, S.112 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.101 NAG.7: 3 residues within 4Å: Chain B: P.100, S.101, S.112 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.101 NAG.10: 3 residues within 4Å: Chain C: P.100, S.101, S.112 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.101 NAG.14: 3 residues within 4Å: Chain D: P.100, S.101, S.112 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.101

2 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.4: 8 residues within 4Å: Chain A: V.85, D.86, G.106, Y.130, Y.135, G.219, N.220, E.223 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.86, A:G.106, A:G.219, A:E.223 GAL.11: 8 residues within 4Å: Chain C: V.85, D.86, Y.130, Y.135, N.136, G.219, N.220, E.223 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.86, C:G.106, C:N.136, C:E.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Loris, R. et al., Structural Basis of Carbohydrate Recognition by Lectin II from Ulex Europaeus, a Protein with a Promiscuous Carbohydrate Binding Site. J.Mol.Biol. (2000)

Release Date

2000-06-22

Peptides

LECTIN II: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

LECTIN II

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