SMTL ID : 1kzd.1

Complex of MBP-C and GlcNAc-terminated core

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 8 residues within 4Å: Chain A: E.80, N.82, V.84, E.88, N.100, D.101, D.106 Ligands: CA.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.82, A:E.88, A:E.88, A:N.100 Water bridges: A:N.100 NAG.4: 8 residues within 4Å: Chain B: E.80, N.82, V.84, E.88, N.100, D.101, D.106 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.88, B:E.88, B:N.100, B:N.100 Water bridges: B:E.88

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.56, E.60, N.83, E.88, N.89 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:D.56, A:E.60, A:E.88, H2O.3 CA.3: 6 residues within 4Å: Chain A: E.80, N.82, E.88, N.100, D.101 Ligands: NAG.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.80, A:E.88, A:D.101, A:D.101 CA.5: 5 residues within 4Å: Chain B: D.56, E.60, N.83, E.88, N.89 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.56, B:D.56, B:E.60, B:E.88, H2O.5 CA.6: 6 residues within 4Å: Chain B: E.80, N.82, E.88, N.100, D.101 Ligands: NAG.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.80, B:E.88, B:D.101, B:D.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ng, K.K. et al., Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition. J.Biol.Chem. (2002)

Release Date

2002-07-05

Peptides

MANNOSE-BINDING PROTEIN C: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

MANNOSE-BINDING PROTEIN C

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